Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TBPL2 (TATA-box binding protein like 2)

Identity

Alias (NCBI)TBP2
TRF3
HGNC (Hugo) TBPL2
HGNC Alias symbTRF3
TBP2
LocusID (NCBI) 387332
Atlas_Id 74549
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 55414211 and ends at 55440545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBPL2   19841
Cards
Entrez_Gene (NCBI)TBPL2    TATA-box binding protein like 2
AliasesTBP2; TRF3
GeneCards (Weizmann)TBPL2
Ensembl hg19 (Hinxton)ENSG00000182521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182521 [Gene_View]  ENSG00000182521 [Sequence]  chr14:55414211-55440545 [Contig_View]  TBPL2 [Vega]
ICGC DataPortalENSG00000182521
TCGA cBioPortalTBPL2
AceView (NCBI)TBPL2
Genatlas (Paris)TBPL2
SOURCE (Princeton)TBPL2
Genetics Home Reference (NIH)TBPL2
Genomic and cartography
GoldenPath hg38 (UCSC)TBPL2  -     chr14:55414211-55440545 -  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBPL2  -     14q22.3   [Description]    (hg19-Feb_2009)
GoldenPathTBPL2 - 14q22.3 [CytoView hg19]  TBPL2 - 14q22.3 [CytoView hg38]
ImmunoBaseENSG00000182521
Genome Data Viewer NCBITBPL2 [Mapview hg19]  
OMIM608964   
Gene and transcription
Genbank (Entrez)AY457923 BC117159 BC117185 DQ448593
RefSeq transcript (Entrez)NM_199047
Consensus coding sequences : CCDS (NCBI)TBPL2
Gene ExpressionTBPL2 [ NCBI-GEO ]   TBPL2 [ EBI - ARRAY_EXPRESS ]   TBPL2 [ SEEK ]   TBPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TBPL2 [ Firebrowse - Broad ]
GenevisibleExpression of TBPL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387332
GTEX Portal (Tissue expression)TBPL2
Human Protein AtlasENSG00000182521-TBPL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6SJ96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6SJ96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6SJ96
PhosPhoSitePlusQ6SJ96
Domaine pattern : Prosite (Expaxy)TFIID (PS00351)   
Domains : Interpro (EBI)TBP    TBP_CS    TBP_dom_sf    TBP_eukaryotic   
Domain families : Pfam (Sanger)TBP (PF00352)   
Domain families : Pfam (NCBI)pfam00352   
Conserved Domain (NCBI)TBPL2
SuperfamilyQ6SJ96
AlphaFold pdb e-kbQ6SJ96   
Human Protein Atlas [tissue]ENSG00000182521-TBPL2 [tissue]
HPRD10607
Protein Interaction databases
DIP (DOE-UCLA)Q6SJ96
IntAct (EBI)Q6SJ96
BioGRIDTBPL2
STRING (EMBL)TBPL2
ZODIACTBPL2
Ontologies - Pathways
QuickGOQ6SJ96
Ontology : AmiGODNA binding  nucleus  cytoplasm  DNA-templated transcription, initiation  transcription by RNA polymerase II  multicellular organism development  RNA polymerase II general transcription initiation factor activity  general transcription initiation factor activity  
Ontology : EGO-EBIDNA binding  nucleus  cytoplasm  DNA-templated transcription, initiation  transcription by RNA polymerase II  multicellular organism development  RNA polymerase II general transcription initiation factor activity  general transcription initiation factor activity  
Pathways : KEGGBasal transcription factors   
NDEx NetworkTBPL2
Atlas of Cancer Signalling NetworkTBPL2
Wikipedia pathwaysTBPL2
Orthology - Evolution
OrthoDB387332
GeneTree (enSembl)ENSG00000182521
Phylogenetic Trees/Animal Genes : TreeFamTBPL2
Homologs : HomoloGeneTBPL2
Homology/Alignments : Family Browser (UCSC)TBPL2
Gene fusions - Rearrangements
Fusion : QuiverTBPL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBPL2
dbVarTBPL2
ClinVarTBPL2
MonarchTBPL2
1000_GenomesTBPL2 
Exome Variant ServerTBPL2
GNOMAD BrowserENSG00000182521
Varsome BrowserTBPL2
ACMGTBPL2 variants
VarityQ6SJ96
Genomic Variants (DGV)TBPL2 [DGVbeta]
DECIPHERTBPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBPL2 
Mutations
ICGC Data PortalTBPL2 
TCGA Data PortalTBPL2 
Broad Tumor PortalTBPL2
OASIS PortalTBPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBPL2
Mutations and Diseases : HGMDTBPL2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBPL2
DgiDB (Drug Gene Interaction Database)TBPL2
DoCM (Curated mutations)TBPL2
CIViC (Clinical Interpretations of Variants in Cancer)TBPL2
Cancer3DTBPL2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608964   
Orphanet
DisGeNETTBPL2
MedgenTBPL2
Genetic Testing Registry TBPL2
NextProtQ6SJ96 [Medical]
GENETestsTBPL2
Target ValidationTBPL2
Huge Navigator TBPL2 [HugePedia]
ClinGenTBPL2
Clinical trials, drugs, therapy
MyCancerGenomeTBPL2
Protein Interactions : CTDTBPL2
Pharm GKB GenePA134990291
PharosQ6SJ96
Clinical trialTBPL2
Miscellaneous
canSAR (ICR)TBPL2
HarmonizomeTBPL2
DataMed IndexTBPL2
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:24:59 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.