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TBPL2 (TATA-box binding protein like 2)

Identity

Alias_symbol (synonym)TRF3
TBP2
Other alias
HGNC (Hugo) TBPL2
LocusID (NCBI) 387332
Atlas_Id 74549
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 55414211 and ends at 55440545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBPL2   19841
Cards
Entrez_Gene (NCBI)TBPL2  387332  TATA-box binding protein like 2
AliasesTBP2; TRF3
GeneCards (Weizmann)TBPL2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:55414211-55440545 [Contig_View]  TBPL2 [Vega]
TCGA cBioPortalTBPL2
AceView (NCBI)TBPL2
Genatlas (Paris)TBPL2
WikiGenes387332
SOURCE (Princeton)TBPL2
Genetics Home Reference (NIH)TBPL2
Genomic and cartography
GoldenPath hg38 (UCSC)TBPL2  -     chr14:55414211-55440545 -  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBPL2  -     14q22.3   [Description]    (hg19-Feb_2009)
EnsemblTBPL2 - 14q22.3 [CytoView hg19]  TBPL2 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBITBPL2 [Mapview hg19]  TBPL2 [Mapview hg38]
OMIM608964   
Gene and transcription
Genbank (Entrez)AY457923 BC117159 BC117185 DQ448593 HQ258397
RefSeq transcript (Entrez)NM_199047
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBPL2
Cluster EST : UnigeneHs.528278 [ NCBI ]
CGAP (NCI)Hs.528278
Gene ExpressionTBPL2 [ NCBI-GEO ]   TBPL2 [ EBI - ARRAY_EXPRESS ]   TBPL2 [ SEEK ]   TBPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TBPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387332
GTEX Portal (Tissue expression)TBPL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6SJ96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6SJ96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6SJ96
Splice isoforms : SwissVarQ6SJ96
PhosPhoSitePlusQ6SJ96
Domaine pattern : Prosite (Expaxy)TFIID (PS00351)   
Domains : Interpro (EBI)Beta2_adaptin/TBP_C_dom    TBP    TBP_CS    TBP_eukaryotic   
Domain families : Pfam (Sanger)TBP (PF00352)   
Domain families : Pfam (NCBI)pfam00352   
Conserved Domain (NCBI)TBPL2
DMDM Disease mutations387332
Blocks (Seattle)TBPL2
SuperfamilyQ6SJ96
Peptide AtlasQ6SJ96
HPRD10607
IPIIPI00791135   IPI01025932   
Protein Interaction databases
DIP (DOE-UCLA)Q6SJ96
IntAct (EBI)Q6SJ96
BioGRIDTBPL2
STRING (EMBL)TBPL2
ZODIACTBPL2
Ontologies - Pathways
QuickGOQ6SJ96
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  DNA-templated transcription, initiation  multicellular organism development  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  DNA-templated transcription, initiation  multicellular organism development  negative regulation of transcription, DNA-templated  
Pathways : KEGGBasal transcription factors    Huntington's disease    HTLV-I infection    Herpes simplex infection    Epstein-Barr virus infection    Viral carcinogenesis   
NDEx NetworkTBPL2
Atlas of Cancer Signalling NetworkTBPL2
Wikipedia pathwaysTBPL2
Orthology - Evolution
OrthoDB387332
Phylogenetic Trees/Animal Genes : TreeFamTBPL2
HOVERGENQ6SJ96
HOGENOMQ6SJ96
Homologs : HomoloGeneTBPL2
Homology/Alignments : Family Browser (UCSC)TBPL2
Gene fusions - Rearrangements
Fusion: Tumor Portal TBPL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBPL2
dbVarTBPL2
ClinVarTBPL2
1000_GenomesTBPL2 
Exome Variant ServerTBPL2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP387332
Genomic Variants (DGV)TBPL2 [DGVbeta]
DECIPHERTBPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBPL2 
Mutations
ICGC Data PortalTBPL2 
TCGA Data PortalTBPL2 
Broad Tumor PortalTBPL2
OASIS PortalTBPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBPL2
DgiDB (Drug Gene Interaction Database)TBPL2
DoCM (Curated mutations)TBPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBPL2 (select a term)
intoGenTBPL2
Cancer3DTBPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608964   
Orphanet
MedgenTBPL2
Genetic Testing Registry TBPL2
NextProtQ6SJ96 [Medical]
TSGene387332
GENETestsTBPL2
Target ValidationTBPL2
Huge Navigator TBPL2 [HugePedia]
snp3D : Map Gene to Disease387332
BioCentury BCIQTBPL2
ClinGenTBPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387332
Chemical/Pharm GKB GenePA134990291
Clinical trialTBPL2
Miscellaneous
canSAR (ICR)TBPL2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBPL2
EVEXTBPL2
GoPubMedTBPL2
iHOPTBPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:31:51 CET 2017

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