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TBR1 (T-box, brain 1)

Identity

Alias_namesT-box, brain, 1
Other aliasTBR-1
TES-56
HGNC (Hugo) TBR1
LocusID (NCBI) 10716
Atlas_Id 74550
Location 2q24.2  [Link to chromosome band 2q24]
Location_base_pair Starts at 161416094 and ends at 161425867 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBR1   11590
Cards
Entrez_Gene (NCBI)TBR1  10716  T-box, brain 1
AliasesTBR-1; TES-56
GeneCards (Weizmann)TBR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:161416094-161425867 [Contig_View]  TBR1 [Vega]
TCGA cBioPortalTBR1
AceView (NCBI)TBR1
Genatlas (Paris)TBR1
WikiGenes10716
SOURCE (Princeton)TBR1
Genetics Home Reference (NIH)TBR1
Genomic and cartography
GoldenPath hg38 (UCSC)TBR1  -     chr2:161416094-161425867 +  2q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBR1  -     2q24.2   [Description]    (hg19-Feb_2009)
EnsemblTBR1 - 2q24.2 [CytoView hg19]  TBR1 - 2q24.2 [CytoView hg38]
Mapping of homologs : NCBITBR1 [Mapview hg19]  TBR1 [Mapview hg38]
OMIM604616   
Gene and transcription
Genbank (Entrez)AK226050 AK297168 AK297438 AK299533 AK312567
RefSeq transcript (Entrez)NM_006593
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBR1
Cluster EST : UnigeneHs.592557 [ NCBI ]
CGAP (NCI)Hs.592557
Gene ExpressionTBR1 [ NCBI-GEO ]   TBR1 [ EBI - ARRAY_EXPRESS ]   TBR1 [ SEEK ]   TBR1 [ MEM ]
Gene Expression Viewer (FireBrowse)TBR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10716
GTEX Portal (Tissue expression)TBR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16650   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16650  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16650
Splice isoforms : SwissVarQ16650
PhosPhoSitePlusQ16650
Domaine pattern : Prosite (Expaxy)TBOX_1 (PS01283)    TBOX_2 (PS01264)    TBOX_3 (PS50252)   
Domains : Interpro (EBI)p53-like_TF_DNA-bd    T-box_assoc    TF_T-box    TF_T-box_CS   
Domain families : Pfam (Sanger)T-box (PF00907)    T-box_assoc (PF16176)   
Domain families : Pfam (NCBI)pfam00907    pfam16176   
Domain families : Smart (EMBL)TBOX (SM00425)  
Conserved Domain (NCBI)TBR1
DMDM Disease mutations10716
Blocks (Seattle)TBR1
SuperfamilyQ16650
Peptide AtlasQ16650
HPRD07055
IPIIPI00003421   IPI00922565   IPI00917272   IPI00916773   
Protein Interaction databases
DIP (DOE-UCLA)Q16650
IntAct (EBI)Q16650
BioGRIDTBR1
STRING (EMBL)TBR1
ZODIACTBR1
Ontologies - Pathways
QuickGOQ16650
Ontology : AmiGORNA polymerase II core promoter sequence-specific DNA binding  conditioned taste aversion  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  brain development  specification of animal organ identity  protein kinase binding  amygdala development  commitment of neuronal cell to specific neuron type in forebrain  cerebral cortex development  hindbrain development  positive regulation of transcription from RNA polymerase II promoter  regulation of axon guidance  
Ontology : EGO-EBIRNA polymerase II core promoter sequence-specific DNA binding  conditioned taste aversion  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  brain development  specification of animal organ identity  protein kinase binding  amygdala development  commitment of neuronal cell to specific neuron type in forebrain  cerebral cortex development  hindbrain development  positive regulation of transcription from RNA polymerase II promoter  regulation of axon guidance  
NDEx NetworkTBR1
Atlas of Cancer Signalling NetworkTBR1
Wikipedia pathwaysTBR1
Orthology - Evolution
OrthoDB10716
Phylogenetic Trees/Animal Genes : TreeFamTBR1
HOVERGENQ16650
HOGENOMQ16650
Homologs : HomoloGeneTBR1
Homology/Alignments : Family Browser (UCSC)TBR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBR1
dbVarTBR1
ClinVarTBR1
1000_GenomesTBR1 
Exome Variant ServerTBR1
ExAC (Exome Aggregation Consortium)TBR1 (select the gene name)
Genetic variants : HAPMAP10716
Genomic Variants (DGV)TBR1 [DGVbeta]
DECIPHERTBR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBR1 
Mutations
ICGC Data PortalTBR1 
TCGA Data PortalTBR1 
Broad Tumor PortalTBR1
OASIS PortalTBR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBR1
DgiDB (Drug Gene Interaction Database)TBR1
DoCM (Curated mutations)TBR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBR1 (select a term)
intoGenTBR1
Cancer3DTBR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604616   
Orphanet
MedgenTBR1
Genetic Testing Registry TBR1
NextProtQ16650 [Medical]
TSGene10716
GENETestsTBR1
Target ValidationTBR1
Huge Navigator TBR1 [HugePedia]
snp3D : Map Gene to Disease10716
BioCentury BCIQTBR1
ClinGenTBR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10716
Chemical/Pharm GKB GenePA36354
Clinical trialTBR1
Miscellaneous
canSAR (ICR)TBR1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBR1
EVEXTBR1
GoPubMedTBR1
iHOPTBR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:00 CEST 2017

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