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TBRG1 (transforming growth factor beta regulator 1)

Identity

Alias (NCBI)NIAM
TB-5
HGNC (Hugo) TBRG1
HGNC Alias symbFLJ14621
TB-5
NIAM
HGNC Alias namenuclear interactor of ARF and MDM2
LocusID (NCBI) 84897
Atlas_Id 42482
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124622864 and ends at 124635926 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCIN (9p13.3) / TBRG1 (11q24.2)TBRG1 (11q24.2) / TBRG1 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBRG1   29551
Cards
Entrez_Gene (NCBI)TBRG1    transforming growth factor beta regulator 1
AliasesNIAM; TB-5
GeneCards (Weizmann)TBRG1
Ensembl hg19 (Hinxton)ENSG00000154144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154144 [Gene_View]  ENSG00000154144 [Sequence]  chr11:124622864-124635926 [Contig_View]  TBRG1 [Vega]
ICGC DataPortalENSG00000154144
TCGA cBioPortalTBRG1
AceView (NCBI)TBRG1
Genatlas (Paris)TBRG1
SOURCE (Princeton)TBRG1
Genetics Home Reference (NIH)TBRG1
Genomic and cartography
GoldenPath hg38 (UCSC)TBRG1  -     chr11:124622864-124635926 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBRG1  -     11q24.2   [Description]    (hg19-Feb_2009)
GoldenPathTBRG1 - 11q24.2 [CytoView hg19]  TBRG1 - 11q24.2 [CytoView hg38]
ImmunoBaseENSG00000154144
Genome Data Viewer NCBITBRG1 [Mapview hg19]  
OMIM610614   
Gene and transcription
Genbank (Entrez)AK027527 AK027766 AK057749 AK074140 AK074594
RefSeq transcript (Entrez)NM_032811
Consensus coding sequences : CCDS (NCBI)TBRG1
Gene ExpressionTBRG1 [ NCBI-GEO ]   TBRG1 [ EBI - ARRAY_EXPRESS ]   TBRG1 [ SEEK ]   TBRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TBRG1 [ Firebrowse - Broad ]
GenevisibleExpression of TBRG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84897
GTEX Portal (Tissue expression)TBRG1
Human Protein AtlasENSG00000154144-TBRG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3YBR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3YBR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3YBR2
PhosPhoSitePlusQ3YBR2
Domaine pattern : Prosite (Expaxy)FYRC (PS51543)    FYRN (PS51542)   
Domains : Interpro (EBI)FYrich_C    FYrich_N    TBRG1   
Domain families : Pfam (Sanger)FYRC (PF05965)    FYRN (PF05964)   
Domain families : Pfam (NCBI)pfam05965    pfam05964   
Domain families : Smart (EMBL)FYRC (SM00542)  FYRN (SM00541)  
Conserved Domain (NCBI)TBRG1
PDB (RSDB)2WZO   
PDB Europe2WZO   
PDB (PDBSum)2WZO   
PDB (IMB)2WZO   
Structural Biology KnowledgeBase2WZO   
SCOP (Structural Classification of Proteins)2WZO   
CATH (Classification of proteins structures)2WZO   
SuperfamilyQ3YBR2
AlphaFold pdb e-kbQ3YBR2   
Human Protein Atlas [tissue]ENSG00000154144-TBRG1 [tissue]
HPRD15477
Protein Interaction databases
DIP (DOE-UCLA)Q3YBR2
IntAct (EBI)Q3YBR2
BioGRIDTBRG1
STRING (EMBL)TBRG1
ZODIACTBRG1
Ontologies - Pathways
QuickGOQ3YBR2
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  DNA replication  cell cycle  negative regulation of cell population proliferation  protein stabilization  regulation of cell cycle  protein localization to nucleoplasm  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  DNA replication  cell cycle  negative regulation of cell population proliferation  protein stabilization  regulation of cell cycle  protein localization to nucleoplasm  
NDEx NetworkTBRG1
Atlas of Cancer Signalling NetworkTBRG1
Wikipedia pathwaysTBRG1
Orthology - Evolution
OrthoDB84897
GeneTree (enSembl)ENSG00000154144
Phylogenetic Trees/Animal Genes : TreeFamTBRG1
Homologs : HomoloGeneTBRG1
Homology/Alignments : Family Browser (UCSC)TBRG1
Gene fusions - Rearrangements
Fusion : QuiverTBRG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBRG1
dbVarTBRG1
ClinVarTBRG1
MonarchTBRG1
1000_GenomesTBRG1 
Exome Variant ServerTBRG1
GNOMAD BrowserENSG00000154144
Varsome BrowserTBRG1
ACMGTBRG1 variants
VarityQ3YBR2
Genomic Variants (DGV)TBRG1 [DGVbeta]
DECIPHERTBRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBRG1 
Mutations
ICGC Data PortalTBRG1 
TCGA Data PortalTBRG1 
Broad Tumor PortalTBRG1
OASIS PortalTBRG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBRG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBRG1
Mutations and Diseases : HGMDTBRG1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBRG1
DgiDB (Drug Gene Interaction Database)TBRG1
DoCM (Curated mutations)TBRG1
CIViC (Clinical Interpretations of Variants in Cancer)TBRG1
Cancer3DTBRG1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610614   
Orphanet
DisGeNETTBRG1
MedgenTBRG1
Genetic Testing Registry TBRG1
NextProtQ3YBR2 [Medical]
GENETestsTBRG1
Target ValidationTBRG1
Huge Navigator TBRG1 [HugePedia]
ClinGenTBRG1
Clinical trials, drugs, therapy
MyCancerGenomeTBRG1
Protein Interactions : CTDTBRG1
Pharm GKB GenePA134926528
PharosQ3YBR2
Clinical trialTBRG1
Miscellaneous
canSAR (ICR)TBRG1
HarmonizomeTBRG1
DataMed IndexTBRG1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:34:29 CEST 2021

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