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TBRG1 (transforming growth factor beta regulator 1)

Identity

Alias_symbol (synonym)FLJ14621
TB-5
NIAM
Other alias
HGNC (Hugo) TBRG1
LocusID (NCBI) 84897
Atlas_Id 42482
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124622846 and ends at 124635926 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCIN (9p13.3) / TBRG1 (11q24.2)TBRG1 (11q24.2) / TBRG1 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBRG1   29551
Cards
Entrez_Gene (NCBI)TBRG1  84897  transforming growth factor beta regulator 1
AliasesNIAM; TB-5
GeneCards (Weizmann)TBRG1
Ensembl hg19 (Hinxton)ENSG00000154144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154144 [Gene_View]  chr11:124622846-124635926 [Contig_View]  TBRG1 [Vega]
ICGC DataPortalENSG00000154144
TCGA cBioPortalTBRG1
AceView (NCBI)TBRG1
Genatlas (Paris)TBRG1
WikiGenes84897
SOURCE (Princeton)TBRG1
Genetics Home Reference (NIH)TBRG1
Genomic and cartography
GoldenPath hg38 (UCSC)TBRG1  -     chr11:124622846-124635926 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBRG1  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblTBRG1 - 11q24.2 [CytoView hg19]  TBRG1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBITBRG1 [Mapview hg19]  TBRG1 [Mapview hg38]
OMIM610614   
Gene and transcription
Genbank (Entrez)AK027527 AK027766 AK057749 AK074140 AK074594
RefSeq transcript (Entrez)NM_032811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBRG1
Cluster EST : UnigeneHs.436410 [ NCBI ]
CGAP (NCI)Hs.436410
Alternative Splicing GalleryENSG00000154144
Gene ExpressionTBRG1 [ NCBI-GEO ]   TBRG1 [ EBI - ARRAY_EXPRESS ]   TBRG1 [ SEEK ]   TBRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TBRG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84897
GTEX Portal (Tissue expression)TBRG1
Human Protein AtlasENSG00000154144-TBRG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3YBR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3YBR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3YBR2
Splice isoforms : SwissVarQ3YBR2
PhosPhoSitePlusQ3YBR2
Domaine pattern : Prosite (Expaxy)FYRC (PS51543)    FYRN (PS51542)   
Domains : Interpro (EBI)FYrich_C    FYrich_N   
Domain families : Pfam (Sanger)FYRC (PF05965)    FYRN (PF05964)   
Domain families : Pfam (NCBI)pfam05965    pfam05964   
Domain families : Smart (EMBL)FYRC (SM00542)  FYRN (SM00541)  
Conserved Domain (NCBI)TBRG1
DMDM Disease mutations84897
Blocks (Seattle)TBRG1
PDB (SRS)2WZO   
PDB (PDBSum)2WZO   
PDB (IMB)2WZO   
PDB (RSDB)2WZO   
Structural Biology KnowledgeBase2WZO   
SCOP (Structural Classification of Proteins)2WZO   
CATH (Classification of proteins structures)2WZO   
SuperfamilyQ3YBR2
Human Protein Atlas [tissue]ENSG00000154144-TBRG1 [tissue]
Peptide AtlasQ3YBR2
HPRD15477
IPIIPI00431454   IPI00045905   IPI00827518   IPI00387063   IPI00807478   IPI00917779   IPI00984916   IPI00976348   
Protein Interaction databases
DIP (DOE-UCLA)Q3YBR2
IntAct (EBI)Q3YBR2
FunCoupENSG00000154144
BioGRIDTBRG1
STRING (EMBL)TBRG1
ZODIACTBRG1
Ontologies - Pathways
QuickGOQ3YBR2
Ontology : AmiGOprotein binding  nucleus  DNA replication  cell cycle arrest  negative regulation of cell proliferation  nucleolus to nucleoplasm transport  protein stabilization  
Ontology : EGO-EBIprotein binding  nucleus  DNA replication  cell cycle arrest  negative regulation of cell proliferation  nucleolus to nucleoplasm transport  protein stabilization  
NDEx NetworkTBRG1
Atlas of Cancer Signalling NetworkTBRG1
Wikipedia pathwaysTBRG1
Orthology - Evolution
OrthoDB84897
GeneTree (enSembl)ENSG00000154144
Phylogenetic Trees/Animal Genes : TreeFamTBRG1
HOVERGENQ3YBR2
HOGENOMQ3YBR2
Homologs : HomoloGeneTBRG1
Homology/Alignments : Family Browser (UCSC)TBRG1
Gene fusions - Rearrangements
Tumor Fusion PortalTBRG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBRG1
dbVarTBRG1
ClinVarTBRG1
1000_GenomesTBRG1 
Exome Variant ServerTBRG1
ExAC (Exome Aggregation Consortium)ENSG00000154144
GNOMAD BrowserENSG00000154144
Genetic variants : HAPMAP84897
Genomic Variants (DGV)TBRG1 [DGVbeta]
DECIPHERTBRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBRG1 
Mutations
ICGC Data PortalTBRG1 
TCGA Data PortalTBRG1 
Broad Tumor PortalTBRG1
OASIS PortalTBRG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBRG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBRG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBRG1
DgiDB (Drug Gene Interaction Database)TBRG1
DoCM (Curated mutations)TBRG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBRG1 (select a term)
intoGenTBRG1
Cancer3DTBRG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610614   
Orphanet
DisGeNETTBRG1
MedgenTBRG1
Genetic Testing Registry TBRG1
NextProtQ3YBR2 [Medical]
TSGene84897
GENETestsTBRG1
Target ValidationTBRG1
Huge Navigator TBRG1 [HugePedia]
snp3D : Map Gene to Disease84897
BioCentury BCIQTBRG1
ClinGenTBRG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84897
Chemical/Pharm GKB GenePA134926528
Clinical trialTBRG1
Miscellaneous
canSAR (ICR)TBRG1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBRG1
EVEXTBRG1
GoPubMedTBRG1
iHOPTBRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:37:52 CET 2017

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