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TBRG4 (transforming growth factor beta regulator 4)

Identity

Alias_symbol (synonym)Cpr2
KIAA0948
H_TD2522F11.8
FASTKD4
Other aliasCPR2
HGNC (Hugo) TBRG4
LocusID (NCBI) 9238
Atlas_Id 42483
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 45100100 and ends at 45111747 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INTS1 (7p22.3) / TBRG4 (7p13)NQO1 (16q22.1) / TBRG4 (7p13)SFPQ (16q24.1) / TBRG4 (7p13)
TBRG4 (7p13) / NEMF (14q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBRG4   17443
Cards
Entrez_Gene (NCBI)TBRG4  9238  transforming growth factor beta regulator 4
AliasesCPR2; FASTKD4
GeneCards (Weizmann)TBRG4
Ensembl hg19 (Hinxton)ENSG00000136270 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136270 [Gene_View]  chr7:45100100-45111747 [Contig_View]  TBRG4 [Vega]
ICGC DataPortalENSG00000136270
TCGA cBioPortalTBRG4
AceView (NCBI)TBRG4
Genatlas (Paris)TBRG4
WikiGenes9238
SOURCE (Princeton)TBRG4
Genetics Home Reference (NIH)TBRG4
Genomic and cartography
GoldenPath hg38 (UCSC)TBRG4  -     chr7:45100100-45111747 -  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBRG4  -     7p13   [Description]    (hg19-Feb_2009)
EnsemblTBRG4 - 7p13 [CytoView hg19]  TBRG4 - 7p13 [CytoView hg38]
Mapping of homologs : NCBITBRG4 [Mapview hg19]  TBRG4 [Mapview hg38]
OMIM611325   
Gene and transcription
Genbank (Entrez)AB023165 AF011792 AK001281 AK022575 AK092132
RefSeq transcript (Entrez)NM_001261834 NM_004749 NM_030900 NM_199122
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBRG4
Cluster EST : UnigeneHs.741611 [ NCBI ]
CGAP (NCI)Hs.741611
Alternative Splicing GalleryENSG00000136270
Gene ExpressionTBRG4 [ NCBI-GEO ]   TBRG4 [ EBI - ARRAY_EXPRESS ]   TBRG4 [ SEEK ]   TBRG4 [ MEM ]
Gene Expression Viewer (FireBrowse)TBRG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9238
GTEX Portal (Tissue expression)TBRG4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969Z0
Splice isoforms : SwissVarQ969Z0
PhosPhoSitePlusQ969Z0
Domaine pattern : Prosite (Expaxy)RAP (PS51286)   
Domains : Interpro (EBI)FAST_2    FAST_Leu-rich    RAP   
Domain families : Pfam (Sanger)FAST_1 (PF06743)    FAST_2 (PF08368)    RAP (PF08373)   
Domain families : Pfam (NCBI)pfam06743    pfam08368    pfam08373   
Domain families : Smart (EMBL)RAP (SM00952)  
Conserved Domain (NCBI)TBRG4
DMDM Disease mutations9238
Blocks (Seattle)TBRG4
SuperfamilyQ969Z0
Human Protein AtlasENSG00000136270
Peptide AtlasQ969Z0
HPRD10263
IPIIPI00477123   IPI00329625   IPI00945791   IPI00947237   IPI00946413   IPI00946836   IPI00946301   IPI00946602   
Protein Interaction databases
DIP (DOE-UCLA)Q969Z0
IntAct (EBI)Q969Z0
FunCoupENSG00000136270
BioGRIDTBRG4
STRING (EMBL)TBRG4
ZODIACTBRG4
Ontologies - Pathways
QuickGOQ969Z0
Ontology : AmiGORNA binding  protein kinase activity  protein binding  mitochondrion  protein phosphorylation  cell cycle arrest  positive regulation of cell proliferation  cellular respiration  
Ontology : EGO-EBIRNA binding  protein kinase activity  protein binding  mitochondrion  protein phosphorylation  cell cycle arrest  positive regulation of cell proliferation  cellular respiration  
NDEx NetworkTBRG4
Atlas of Cancer Signalling NetworkTBRG4
Wikipedia pathwaysTBRG4
Orthology - Evolution
OrthoDB9238
GeneTree (enSembl)ENSG00000136270
Phylogenetic Trees/Animal Genes : TreeFamTBRG4
HOVERGENQ969Z0
HOGENOMQ969Z0
Homologs : HomoloGeneTBRG4
Homology/Alignments : Family Browser (UCSC)TBRG4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBRG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBRG4
dbVarTBRG4
ClinVarTBRG4
1000_GenomesTBRG4 
Exome Variant ServerTBRG4
ExAC (Exome Aggregation Consortium)TBRG4 (select the gene name)
Genetic variants : HAPMAP9238
Genomic Variants (DGV)TBRG4 [DGVbeta]
DECIPHERTBRG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBRG4 
Mutations
ICGC Data PortalTBRG4 
TCGA Data PortalTBRG4 
Broad Tumor PortalTBRG4
OASIS PortalTBRG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBRG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBRG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TBRG4
DgiDB (Drug Gene Interaction Database)TBRG4
DoCM (Curated mutations)TBRG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBRG4 (select a term)
intoGenTBRG4
Cancer3DTBRG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611325   
Orphanet
MedgenTBRG4
Genetic Testing Registry TBRG4
NextProtQ969Z0 [Medical]
TSGene9238
GENETestsTBRG4
Target ValidationTBRG4
Huge Navigator TBRG4 [HugePedia]
snp3D : Map Gene to Disease9238
BioCentury BCIQTBRG4
ClinGenTBRG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9238
Chemical/Pharm GKB GenePA134882196
Clinical trialTBRG4
Miscellaneous
canSAR (ICR)TBRG4 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBRG4
EVEXTBRG4
GoPubMedTBRG4
iHOPTBRG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:47 CEST 2017

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