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TBX10 (T-box transcription factor 10)

Identity

Alias (NCBI)TBX13
TBX7
HGNC (Hugo) TBX10
HGNC Alias symbTBX13
HGNC Previous nameTBX7
HGNC Previous nameT-box 7
LocusID (NCBI) 347853
Atlas_Id 74551
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67631303 and ends at 67639560 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBX10   11593
Cards
Entrez_Gene (NCBI)TBX10    T-box transcription factor 10
AliasesTBX13; TBX7
GeneCards (Weizmann)TBX10
Ensembl hg19 (Hinxton)ENSG00000167800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167800 [Gene_View]  ENSG00000167800 [Sequence]  chr11:67631303-67639560 [Contig_View]  TBX10 [Vega]
ICGC DataPortalENSG00000167800
TCGA cBioPortalTBX10
AceView (NCBI)TBX10
Genatlas (Paris)TBX10
SOURCE (Princeton)TBX10
Genetics Home Reference (NIH)TBX10
Genomic and cartography
GoldenPath hg38 (UCSC)TBX10  -     chr11:67631303-67639560 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBX10  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTBX10 - 11q13.2 [CytoView hg19]  TBX10 - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000167800
Genome Data Viewer NCBITBX10 [Mapview hg19]  
OMIM604648   
Gene and transcription
Genbank (Entrez)AY229977 BC113485 BC113487
RefSeq transcript (Entrez)NM_005995
Consensus coding sequences : CCDS (NCBI)TBX10
Gene ExpressionTBX10 [ NCBI-GEO ]   TBX10 [ EBI - ARRAY_EXPRESS ]   TBX10 [ SEEK ]   TBX10 [ MEM ]
Gene Expression Viewer (FireBrowse)TBX10 [ Firebrowse - Broad ]
GenevisibleExpression of TBX10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347853
GTEX Portal (Tissue expression)TBX10
Human Protein AtlasENSG00000167800-TBX10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75333   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75333  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75333
PhosPhoSitePlusO75333
Domaine pattern : Prosite (Expaxy)TBOX_1 (PS01283)    TBOX_2 (PS01264)    TBOX_3 (PS50252)   
Domains : Interpro (EBI)p53-like_TF_DNA-bd    T-box_sf    TF_T-box    TF_T-box_CS   
Domain families : Pfam (Sanger)T-box (PF00907)   
Domain families : Pfam (NCBI)pfam00907   
Domain families : Smart (EMBL)TBOX (SM00425)  
Conserved Domain (NCBI)TBX10
SuperfamilyO75333
AlphaFold pdb e-kbO75333   
Human Protein Atlas [tissue]ENSG00000167800-TBX10 [tissue]
HPRD06872
Protein Interaction databases
DIP (DOE-UCLA)O75333
IntAct (EBI)O75333
BioGRIDTBX10
STRING (EMBL)TBX10
ZODIACTBX10
Ontologies - Pathways
QuickGOO75333
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  cell fate specification  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  cell fate specification  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  
NDEx NetworkTBX10
Atlas of Cancer Signalling NetworkTBX10
Wikipedia pathwaysTBX10
Orthology - Evolution
OrthoDB347853
GeneTree (enSembl)ENSG00000167800
Phylogenetic Trees/Animal Genes : TreeFamTBX10
Homologs : HomoloGeneTBX10
Homology/Alignments : Family Browser (UCSC)TBX10
Gene fusions - Rearrangements
Fusion : QuiverTBX10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBX10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBX10
dbVarTBX10
ClinVarTBX10
MonarchTBX10
1000_GenomesTBX10 
Exome Variant ServerTBX10
GNOMAD BrowserENSG00000167800
Varsome BrowserTBX10
ACMGTBX10 variants
VarityO75333
Genomic Variants (DGV)TBX10 [DGVbeta]
DECIPHERTBX10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBX10 
Mutations
ICGC Data PortalTBX10 
TCGA Data PortalTBX10 
Broad Tumor PortalTBX10
OASIS PortalTBX10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBX10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBX10
Mutations and Diseases : HGMDTBX10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBX10
DgiDB (Drug Gene Interaction Database)TBX10
DoCM (Curated mutations)TBX10
CIViC (Clinical Interpretations of Variants in Cancer)TBX10
Cancer3DTBX10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604648   
Orphanet
DisGeNETTBX10
MedgenTBX10
Genetic Testing Registry TBX10
NextProtO75333 [Medical]
GENETestsTBX10
Target ValidationTBX10
Huge Navigator TBX10 [HugePedia]
ClinGenTBX10
Clinical trials, drugs, therapy
MyCancerGenomeTBX10
Protein Interactions : CTDTBX10
Pharm GKB GenePA36356
PharosO75333
Clinical trialTBX10
Miscellaneous
canSAR (ICR)TBX10
HarmonizomeTBX10
DataMed IndexTBX10
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBX10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:00 CEST 2021

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