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TBX19 (T-box transcription factor 19)

Identity

Alias (NCBI)TBS19
TPIT
dJ747L4.1
HGNC (Hugo) TBX19
HGNC Alias symbdj747L4.1
TPIT
HGNC Alias nameTBS 19
HGNC Previous nameT-box 19
LocusID (NCBI) 9095
Atlas_Id 56414
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168280877 and ends at 168314426 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SFT2D2 (1q24.2) / TBX19 (1q24.2)STAT5B (17q21.2) / TBX19 (1q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TBX19   11596
Cards
Entrez_Gene (NCBI)TBX19    T-box transcription factor 19
AliasesTBS19; TPIT; dJ747L4.1
GeneCards (Weizmann)TBX19
Ensembl hg19 (Hinxton)ENSG00000143178 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143178 [Gene_View]  ENSG00000143178 [Sequence]  chr1:168280877-168314426 [Contig_View]  TBX19 [Vega]
ICGC DataPortalENSG00000143178
TCGA cBioPortalTBX19
AceView (NCBI)TBX19
Genatlas (Paris)TBX19
SOURCE (Princeton)TBX19
Genetics Home Reference (NIH)TBX19
Genomic and cartography
GoldenPath hg38 (UCSC)TBX19  -     chr1:168280877-168314426 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBX19  -     1q24.2   [Description]    (hg19-Feb_2009)
GoldenPathTBX19 - 1q24.2 [CytoView hg19]  TBX19 - 1q24.2 [CytoView hg38]
ImmunoBaseENSG00000143178
Genome Data Viewer NCBITBX19 [Mapview hg19]  
OMIM201400   604614   
Gene and transcription
Genbank (Entrez)AJ010277 AK091862 AK129813 BC093664 BC093666
RefSeq transcript (Entrez)NM_005149
Consensus coding sequences : CCDS (NCBI)TBX19
Gene ExpressionTBX19 [ NCBI-GEO ]   TBX19 [ EBI - ARRAY_EXPRESS ]   TBX19 [ SEEK ]   TBX19 [ MEM ]
Gene Expression Viewer (FireBrowse)TBX19 [ Firebrowse - Broad ]
GenevisibleExpression of TBX19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9095
GTEX Portal (Tissue expression)TBX19
Human Protein AtlasENSG00000143178-TBX19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60806   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60806  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60806
PhosPhoSitePlusO60806
Domaine pattern : Prosite (Expaxy)TBOX_1 (PS01283)    TBOX_2 (PS01264)    TBOX_3 (PS50252)   
Domains : Interpro (EBI)p53-like_TF_DNA-bd    T-box_sf    TF_Brachyury    TF_T-box    TF_T-box_CS   
Domain families : Pfam (Sanger)T-box (PF00907)   
Domain families : Pfam (NCBI)pfam00907   
Domain families : Smart (EMBL)TBOX (SM00425)  
Conserved Domain (NCBI)TBX19
SuperfamilyO60806
AlphaFold pdb e-kbO60806   
Human Protein Atlas [tissue]ENSG00000143178-TBX19 [tissue]
HPRD05214
Protein Interaction databases
DIP (DOE-UCLA)O60806
IntAct (EBI)O60806
BioGRIDTBX19
STRING (EMBL)TBX19
ZODIACTBX19
Ontologies - Pathways
QuickGOO60806
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  mesoderm formation  cell fate specification  somitogenesis  heart morphogenesis  protein binding  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  pituitary gland development  regulation of cell population proliferation  regulation of cell differentiation  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  mesoderm formation  cell fate specification  somitogenesis  heart morphogenesis  protein binding  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  pituitary gland development  regulation of cell population proliferation  regulation of cell differentiation  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkTBX19
Atlas of Cancer Signalling NetworkTBX19
Wikipedia pathwaysTBX19
Orthology - Evolution
OrthoDB9095
GeneTree (enSembl)ENSG00000143178
Phylogenetic Trees/Animal Genes : TreeFamTBX19
Homologs : HomoloGeneTBX19
Homology/Alignments : Family Browser (UCSC)TBX19
Gene fusions - Rearrangements
Fusion : QuiverTBX19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBX19
dbVarTBX19
ClinVarTBX19
MonarchTBX19
1000_GenomesTBX19 
Exome Variant ServerTBX19
GNOMAD BrowserENSG00000143178
Varsome BrowserTBX19
ACMGTBX19 variants
VarityO60806
Genomic Variants (DGV)TBX19 [DGVbeta]
DECIPHERTBX19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBX19 
Mutations
ICGC Data PortalTBX19 
TCGA Data PortalTBX19 
Broad Tumor PortalTBX19
OASIS PortalTBX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBX19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTBX19
Mutations and Diseases : HGMDTBX19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTBX19
DgiDB (Drug Gene Interaction Database)TBX19
DoCM (Curated mutations)TBX19
CIViC (Clinical Interpretations of Variants in Cancer)TBX19
Cancer3DTBX19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM201400    604614   
Orphanet18392   
DisGeNETTBX19
MedgenTBX19
Genetic Testing Registry TBX19
NextProtO60806 [Medical]
GENETestsTBX19
Target ValidationTBX19
Huge Navigator TBX19 [HugePedia]
ClinGenTBX19
Clinical trials, drugs, therapy
MyCancerGenomeTBX19
Protein Interactions : CTDTBX19
Pharm GKB GenePA36359
PharosO60806
Clinical trialTBX19
Miscellaneous
canSAR (ICR)TBX19
HarmonizomeTBX19
DataMed IndexTBX19
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTBX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:30 CEST 2021

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