Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TBX19 (T-box 19)

Identity

Alias_symbol (synonym)dj747L4.1
TPIT
Other aliasTBS19
dJ747L4.1
HGNC (Hugo) TBX19
LocusID (NCBI) 9095
Atlas_Id 56414
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168281040 and ends at 168314428 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SFT2D2 (1q24.2) / TBX19 (1q24.2)STAT5B (17q21.2) / TBX19 (1q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBX19   11596
Cards
Entrez_Gene (NCBI)TBX19  9095  T-box 19
AliasesTBS19; TPIT; dJ747L4.1
GeneCards (Weizmann)TBX19
Ensembl hg19 (Hinxton)ENSG00000143178 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143178 [Gene_View]  chr1:168281040-168314428 [Contig_View]  TBX19 [Vega]
ICGC DataPortalENSG00000143178
TCGA cBioPortalTBX19
AceView (NCBI)TBX19
Genatlas (Paris)TBX19
WikiGenes9095
SOURCE (Princeton)TBX19
Genetics Home Reference (NIH)TBX19
Genomic and cartography
GoldenPath hg38 (UCSC)TBX19  -     chr1:168281040-168314428 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBX19  -     1q24.2   [Description]    (hg19-Feb_2009)
EnsemblTBX19 - 1q24.2 [CytoView hg19]  TBX19 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBITBX19 [Mapview hg19]  TBX19 [Mapview hg38]
OMIM201400   604614   
Gene and transcription
Genbank (Entrez)AJ010277 AK091862 AK129813 BC093664 BC093666
RefSeq transcript (Entrez)NM_005149
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBX19
Cluster EST : UnigeneHs.716656 [ NCBI ]
CGAP (NCI)Hs.716656
Alternative Splicing GalleryENSG00000143178
Gene ExpressionTBX19 [ NCBI-GEO ]   TBX19 [ EBI - ARRAY_EXPRESS ]   TBX19 [ SEEK ]   TBX19 [ MEM ]
Gene Expression Viewer (FireBrowse)TBX19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9095
GTEX Portal (Tissue expression)TBX19
Human Protein AtlasENSG00000143178-TBX19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60806   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60806  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60806
Splice isoforms : SwissVarO60806
PhosPhoSitePlusO60806
Domaine pattern : Prosite (Expaxy)TBOX_1 (PS01283)    TBOX_2 (PS01264)    TBOX_3 (PS50252)   
Domains : Interpro (EBI)p53-like_TF_DNA-bd    TF_Brachyury    TF_T-box    TF_T-box_CS   
Domain families : Pfam (Sanger)T-box (PF00907)   
Domain families : Pfam (NCBI)pfam00907   
Domain families : Smart (EMBL)TBOX (SM00425)  
Conserved Domain (NCBI)TBX19
DMDM Disease mutations9095
Blocks (Seattle)TBX19
SuperfamilyO60806
Human Protein Atlas [tissue]ENSG00000143178-TBX19 [tissue]
Peptide AtlasO60806
HPRD05214
IPIIPI00032197   IPI00642525   IPI00979683   IPI00644654   
Protein Interaction databases
DIP (DOE-UCLA)O60806
IntAct (EBI)O60806
FunCoupENSG00000143178
BioGRIDTBX19
STRING (EMBL)TBX19
ZODIACTBX19
Ontologies - Pathways
QuickGOO60806
Ontology : AmiGOenhancer sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  anatomical structure morphogenesis  pituitary gland development  regulation of cell proliferation  cell fate commitment  regulation of cell differentiation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIenhancer sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  anatomical structure morphogenesis  pituitary gland development  regulation of cell proliferation  cell fate commitment  regulation of cell differentiation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkTBX19
Atlas of Cancer Signalling NetworkTBX19
Wikipedia pathwaysTBX19
Orthology - Evolution
OrthoDB9095
GeneTree (enSembl)ENSG00000143178
Phylogenetic Trees/Animal Genes : TreeFamTBX19
HOVERGENO60806
HOGENOMO60806
Homologs : HomoloGeneTBX19
Homology/Alignments : Family Browser (UCSC)TBX19
Gene fusions - Rearrangements
Tumor Fusion PortalTBX19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBX19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBX19
dbVarTBX19
ClinVarTBX19
1000_GenomesTBX19 
Exome Variant ServerTBX19
ExAC (Exome Aggregation Consortium)ENSG00000143178
GNOMAD BrowserENSG00000143178
Genetic variants : HAPMAP9095
Genomic Variants (DGV)TBX19 [DGVbeta]
DECIPHERTBX19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBX19 
Mutations
ICGC Data PortalTBX19 
TCGA Data PortalTBX19 
Broad Tumor PortalTBX19
OASIS PortalTBX19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBX19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBX19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBX19
DgiDB (Drug Gene Interaction Database)TBX19
DoCM (Curated mutations)TBX19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBX19 (select a term)
intoGenTBX19
Cancer3DTBX19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM201400    604614   
Orphanet18392   
DisGeNETTBX19
MedgenTBX19
Genetic Testing Registry TBX19
NextProtO60806 [Medical]
TSGene9095
GENETestsTBX19
Target ValidationTBX19
Huge Navigator TBX19 [HugePedia]
snp3D : Map Gene to Disease9095
BioCentury BCIQTBX19
ClinGenTBX19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9095
Chemical/Pharm GKB GenePA36359
Clinical trialTBX19
Miscellaneous
canSAR (ICR)TBX19 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBX19
EVEXTBX19
GoPubMedTBX19
iHOPTBX19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:37:53 CET 2017

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