Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TBX20 (T-box 20)

Identity

Other aliasASD4
HGNC (Hugo) TBX20
LocusID (NCBI) 57057
Atlas_Id 56233
Location 7p14.2  [Link to chromosome band 7p14]
Location_base_pair Starts at 35202430 and ends at 35254100 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBX20   11598
LRG (Locus Reference Genomic)LRG_755
Cards
Entrez_Gene (NCBI)TBX20  57057  T-box 20
AliasesASD4
GeneCards (Weizmann)TBX20
Ensembl hg19 (Hinxton)ENSG00000164532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164532 [Gene_View]  chr7:35202430-35254100 [Contig_View]  TBX20 [Vega]
ICGC DataPortalENSG00000164532
TCGA cBioPortalTBX20
AceView (NCBI)TBX20
Genatlas (Paris)TBX20
WikiGenes57057
SOURCE (Princeton)TBX20
Genetics Home Reference (NIH)TBX20
Genomic and cartography
GoldenPath hg38 (UCSC)TBX20  -     chr7:35202430-35254100 -  7p14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBX20  -     7p14.2   [Description]    (hg19-Feb_2009)
EnsemblTBX20 - 7p14.2 [CytoView hg19]  TBX20 - 7p14.2 [CytoView hg38]
Mapping of homologs : NCBITBX20 [Mapview hg19]  TBX20 [Mapview hg38]
OMIM606061   611363   
Gene and transcription
Genbank (Entrez)AJ237589 BC120945 BC120946 DQ986374
RefSeq transcript (Entrez)NM_001077653 NM_001166220 NM_020417
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBX20
Cluster EST : UnigeneHs.404167 [ NCBI ]
CGAP (NCI)Hs.404167
Alternative Splicing GalleryENSG00000164532
Gene ExpressionTBX20 [ NCBI-GEO ]   TBX20 [ EBI - ARRAY_EXPRESS ]   TBX20 [ SEEK ]   TBX20 [ MEM ]
Gene Expression Viewer (FireBrowse)TBX20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57057
GTEX Portal (Tissue expression)TBX20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMR3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UMR3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UMR3
Splice isoforms : SwissVarQ9UMR3
PhosPhoSitePlusQ9UMR3
Domaine pattern : Prosite (Expaxy)TBOX_1 (PS01283)    TBOX_2 (PS01264)    TBOX_3 (PS50252)   
Domains : Interpro (EBI)p53-like_TF_DNA-bd    TF_T-box    TF_T-box_CS   
Domain families : Pfam (Sanger)T-box (PF00907)   
Domain families : Pfam (NCBI)pfam00907   
Domain families : Smart (EMBL)TBOX (SM00425)  
Conserved Domain (NCBI)TBX20
DMDM Disease mutations57057
Blocks (Seattle)TBX20
SuperfamilyQ9UMR3
Human Protein AtlasENSG00000164532
Peptide AtlasQ9UMR3
HPRD06931
IPIIPI00926476   IPI00956529   IPI00956710   IPI00328225   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMR3
IntAct (EBI)Q9UMR3
FunCoupENSG00000164532
BioGRIDTBX20
STRING (EMBL)TBX20
ZODIACTBX20
Ontologies - Pathways
QuickGOQ9UMR3
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  RNA polymerase II transcription factor binding  RNA polymerase II activating transcription factor binding  RNA polymerase II transcription coactivator activity  branching involved in blood vessel morphogenesis  endoderm formation  neuron migration  heart looping  embryonic heart tube morphogenesis  outflow tract septum morphogenesis  tricuspid valve development  aortic valve morphogenesis  pulmonary valve formation  endocardial cushion morphogenesis  cardiac chamber formation  cardiac right ventricle morphogenesis  endocardial cushion formation  cardiac septum development  pericardium morphogenesis  nucleus  cytoplasm  transcription from RNA polymerase II promoter  muscle contraction  blood circulation  cell proliferation  dorsal/ventral pattern formation  negative regulation of SMAD protein complex assembly  visceral motor neuron differentiation  foramen ovale closure  embryonic heart tube elongation  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  lateral mesoderm formation  cardiac muscle tissue morphogenesis  positive regulation of cardiac muscle cell proliferation  atrial septum morphogenesis  pulmonary vein morphogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  RNA polymerase II transcription factor binding  RNA polymerase II activating transcription factor binding  RNA polymerase II transcription coactivator activity  branching involved in blood vessel morphogenesis  endoderm formation  neuron migration  heart looping  embryonic heart tube morphogenesis  outflow tract septum morphogenesis  tricuspid valve development  aortic valve morphogenesis  pulmonary valve formation  endocardial cushion morphogenesis  cardiac chamber formation  cardiac right ventricle morphogenesis  endocardial cushion formation  cardiac septum development  pericardium morphogenesis  nucleus  cytoplasm  transcription from RNA polymerase II promoter  muscle contraction  blood circulation  cell proliferation  dorsal/ventral pattern formation  negative regulation of SMAD protein complex assembly  visceral motor neuron differentiation  foramen ovale closure  embryonic heart tube elongation  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  lateral mesoderm formation  cardiac muscle tissue morphogenesis  positive regulation of cardiac muscle cell proliferation  atrial septum morphogenesis  pulmonary vein morphogenesis  
NDEx NetworkTBX20
Atlas of Cancer Signalling NetworkTBX20
Wikipedia pathwaysTBX20
Orthology - Evolution
OrthoDB57057
GeneTree (enSembl)ENSG00000164532
Phylogenetic Trees/Animal Genes : TreeFamTBX20
HOVERGENQ9UMR3
HOGENOMQ9UMR3
Homologs : HomoloGeneTBX20
Homology/Alignments : Family Browser (UCSC)TBX20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBX20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBX20
dbVarTBX20
ClinVarTBX20
1000_GenomesTBX20 
Exome Variant ServerTBX20
ExAC (Exome Aggregation Consortium)TBX20 (select the gene name)
Genetic variants : HAPMAP57057
Genomic Variants (DGV)TBX20 [DGVbeta]
DECIPHERTBX20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBX20 
Mutations
ICGC Data PortalTBX20 
TCGA Data PortalTBX20 
Broad Tumor PortalTBX20
OASIS PortalTBX20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBX20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBX20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TBX20
DgiDB (Drug Gene Interaction Database)TBX20
DoCM (Curated mutations)TBX20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBX20 (select a term)
intoGenTBX20
Cancer3DTBX20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606061    611363   
Orphanet14120    14120   
MedgenTBX20
Genetic Testing Registry TBX20
NextProtQ9UMR3 [Medical]
TSGene57057
GENETestsTBX20
Target ValidationTBX20
Huge Navigator TBX20 [HugePedia]
snp3D : Map Gene to Disease57057
BioCentury BCIQTBX20
ClinGenTBX20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57057
Chemical/Pharm GKB GenePA36361
Clinical trialTBX20
Miscellaneous
canSAR (ICR)TBX20 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBX20
EVEXTBX20
GoPubMedTBX20
iHOPTBX20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:34:27 CEST 2017

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