Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TBX22 (T-box 22)

Identity

Alias_namesCPX
CLPA
cleft palate and/or ankyloglossia
Other aliasABERS
TBXX
dJ795G23.1
HGNC (Hugo) TBX22
LocusID (NCBI) 50945
Atlas_Id 74554
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 80014756 and ends at 80031769 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBX22   11600
Cards
Entrez_Gene (NCBI)TBX22  50945  T-box 22
AliasesABERS; CLPA; CPX; TBXX; 
dJ795G23.1
GeneCards (Weizmann)TBX22
Ensembl hg19 (Hinxton)ENSG00000122145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122145 [Gene_View]  chrX:80014756-80031769 [Contig_View]  TBX22 [Vega]
ICGC DataPortalENSG00000122145
TCGA cBioPortalTBX22
AceView (NCBI)TBX22
Genatlas (Paris)TBX22
WikiGenes50945
SOURCE (Princeton)TBX22
Genetics Home Reference (NIH)TBX22
Genomic and cartography
GoldenPath hg38 (UCSC)TBX22  -     chrX:80014756-80031769 +  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBX22  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblTBX22 - Xq21.1 [CytoView hg19]  TBX22 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBITBX22 [Mapview hg19]  TBX22 [Mapview hg38]
OMIM300307   302905   303400   
Gene and transcription
Genbank (Entrez)AF251684 AK097514 AW104387 AY035371 BC014194
RefSeq transcript (Entrez)NM_001109878 NM_001109879 NM_001303475 NM_016954
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_008998 NT_187635
Consensus coding sequences : CCDS (NCBI)TBX22
Cluster EST : UnigeneHs.374253 [ NCBI ]
CGAP (NCI)Hs.374253
Alternative Splicing GalleryENSG00000122145
Gene ExpressionTBX22 [ NCBI-GEO ]   TBX22 [ EBI - ARRAY_EXPRESS ]   TBX22 [ SEEK ]   TBX22 [ MEM ]
Gene Expression Viewer (FireBrowse)TBX22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50945
GTEX Portal (Tissue expression)TBX22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y458   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y458  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y458
Splice isoforms : SwissVarQ9Y458
PhosPhoSitePlusQ9Y458
Domaine pattern : Prosite (Expaxy)TBOX_1 (PS01283)    TBOX_2 (PS01264)    TBOX_3 (PS50252)   
Domains : Interpro (EBI)p53-like_TF_DNA-bd    TF_T-box    TF_T-box_CS   
Domain families : Pfam (Sanger)T-box (PF00907)   
Domain families : Pfam (NCBI)pfam00907   
Domain families : Smart (EMBL)TBOX (SM00425)  
Conserved Domain (NCBI)TBX22
DMDM Disease mutations50945
Blocks (Seattle)TBX22
SuperfamilyQ9Y458
Human Protein AtlasENSG00000122145
Peptide AtlasQ9Y458
HPRD02253
IPIIPI00000321   IPI00645970   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y458
IntAct (EBI)Q9Y458
FunCoupENSG00000122145
BioGRIDTBX22
STRING (EMBL)TBX22
ZODIACTBX22
Ontologies - Pathways
QuickGOQ9Y458
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  negative regulation of transcription, DNA-templated  
NDEx NetworkTBX22
Atlas of Cancer Signalling NetworkTBX22
Wikipedia pathwaysTBX22
Orthology - Evolution
OrthoDB50945
GeneTree (enSembl)ENSG00000122145
Phylogenetic Trees/Animal Genes : TreeFamTBX22
HOVERGENQ9Y458
HOGENOMQ9Y458
Homologs : HomoloGeneTBX22
Homology/Alignments : Family Browser (UCSC)TBX22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTBX22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TBX22
dbVarTBX22
ClinVarTBX22
1000_GenomesTBX22 
Exome Variant ServerTBX22
ExAC (Exome Aggregation Consortium)TBX22 (select the gene name)
Genetic variants : HAPMAP50945
Genomic Variants (DGV)TBX22 [DGVbeta]
DECIPHERTBX22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTBX22 
Mutations
ICGC Data PortalTBX22 
TCGA Data PortalTBX22 
Broad Tumor PortalTBX22
OASIS PortalTBX22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTBX22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTBX22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch TBX22
DgiDB (Drug Gene Interaction Database)TBX22
DoCM (Curated mutations)TBX22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TBX22 (select a term)
intoGenTBX22
Cancer3DTBX22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300307    302905    303400   
Orphanet1248    21791   
MedgenTBX22
Genetic Testing Registry TBX22
NextProtQ9Y458 [Medical]
TSGene50945
GENETestsTBX22
Target ValidationTBX22
Huge Navigator TBX22 [HugePedia]
snp3D : Map Gene to Disease50945
BioCentury BCIQTBX22
ClinGenTBX22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50945
Chemical/Pharm GKB GenePA36363
Clinical trialTBX22
Miscellaneous
canSAR (ICR)TBX22 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBX22
EVEXTBX22
GoPubMedTBX22
iHOPTBX22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:41:16 CEST 2017

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