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TBXAS1 (thromboxane A synthase 1)

Identity

Alias_namesthromboxane A synthase 1 (platelet, cytochrome P450, subfamily V)
thromboxane A synthase 1 (platelet)
Alias_symbol (synonym)CYP5
CYP5A1
THAS
TXS
TXAS
TS
Other aliasBDPLT14
GHOSAL
HGNC (Hugo) TBXAS1
LocusID (NCBI) 6916
Atlas_Id 46559
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 139829153 and ends at 140020325 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NFKB2 (10q24.32) / TBXAS1 (7q34)RPAP2 (1p22.1) / TBXAS1 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBXAS1   11609
LRG (Locus Reference Genomic)LRG_579
Cards
Entrez_Gene (NCBI)TBXAS1  6916  thromboxane A synthase 1
AliasesBDPLT14; CYP5; CYP5A1; GHOSAL; 
THAS; TS; TXAS; TXS
GeneCards (Weizmann)TBXAS1
Ensembl hg19 (Hinxton)ENSG00000059377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000059377 [Gene_View]  ENSG00000059377 [Sequence]  chr7:139829153-140020325 [Contig_View]  TBXAS1 [Vega]
ICGC DataPortalENSG00000059377
TCGA cBioPortalTBXAS1
AceView (NCBI)TBXAS1
Genatlas (Paris)TBXAS1
WikiGenes6916
SOURCE (Princeton)TBXAS1
Genetics Home Reference (NIH)TBXAS1
Genomic and cartography
GoldenPath hg38 (UCSC)TBXAS1  -     chr7:139829153-140020325 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBXAS1  -     7q34   [Description]    (hg19-Feb_2009)
GoldenPathTBXAS1 - 7q34 [CytoView hg19]  TBXAS1 - 7q34 [CytoView hg38]
ImmunoBaseENSG00000059377
Mapping of homologs : NCBITBXAS1 [Mapview hg19]  TBXAS1 [Mapview hg38]
OMIM231095   274180   614158   
Gene and transcription
Genbank (Entrez)AK223466 AK296069 AK301049 AK301164 AK303440
RefSeq transcript (Entrez)NM_001061 NM_001130966 NM_001166253 NM_001166254 NM_001314028 NM_001366537 NM_001366538 NM_030984
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBXAS1
Alternative Splicing GalleryENSG00000059377
Gene ExpressionTBXAS1 [ NCBI-GEO ]   TBXAS1 [ EBI - ARRAY_EXPRESS ]   TBXAS1 [ SEEK ]   TBXAS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TBXAS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6916
GTEX Portal (Tissue expression)TBXAS1
Human Protein AtlasENSG00000059377-TBXAS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TBXAS1
DMDM Disease mutations6916
Blocks (Seattle)TBXAS1
Human Protein Atlas [tissue]ENSG00000059377-TBXAS1 [tissue]
HPRD02035
IPIIPI00924916   IPI00940459   IPI00922101   IPI00788599   IPI00909791   IPI00008967   IPI00927619   IPI00927208   IPI00927015   
Protein Interaction databases
FunCoupENSG00000059377
BioGRIDTBXAS1
STRING (EMBL)TBXAS1
ZODIACTBXAS1
Ontologies - Pathways
Huge Navigator TBXAS1 [HugePedia]
snp3D : Map Gene to Disease6916
BioCentury BCIQTBXAS1
ClinGenTBXAS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6916
Chemical/Pharm GKB GenePA349
Clinical trialTBXAS1
Miscellaneous
canSAR (ICR)TBXAS1 (select the gene name)
DataMed IndexTBXAS1
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBXAS1
EVEXTBXAS1
GoPubMedTBXAS1
iHOPTBXAS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:12:19 CET 2020

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