Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCAF1 (TRPM8 channel associated factor 1)

Identity

Alias (NCBI)FAM115A
GATD9A
HGNC (Hugo) TCAF1
HGNC Alias symbKIAA0738
GATD9A
HGNC Previous nameFAM115A
HGNC Previous namefamily with sequence similarity 115, member A
 TRPM8 channel-associated factor 1
LocusID (NCBI) 9747
Atlas_Id 55663
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143851375 and ends at 143902176 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TCAF1 (7q35) / BAIAP2L1 (7q21.3)TCAF1 (7q35) / SDCCAG8 (1q43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCAF1   22201
Cards
Entrez_Gene (NCBI)TCAF1    TRPM8 channel associated factor 1
AliasesFAM115A; GATD9A
GeneCards (Weizmann)TCAF1
Ensembl hg19 (Hinxton)ENSG00000198420 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198420 [Gene_View]  ENSG00000198420 [Sequence]  chr7:143851375-143902176 [Contig_View]  TCAF1 [Vega]
ICGC DataPortalENSG00000198420
TCGA cBioPortalTCAF1
AceView (NCBI)TCAF1
Genatlas (Paris)TCAF1
SOURCE (Princeton)TCAF1
Genetics Home Reference (NIH)TCAF1
Genomic and cartography
GoldenPath hg38 (UCSC)TCAF1  -     chr7:143851375-143902176 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCAF1  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathTCAF1 - 7q35 [CytoView hg19]  TCAF1 - 7q35 [CytoView hg38]
ImmunoBaseENSG00000198420
Genome Data Viewer NCBITCAF1 [Mapview hg19]  
OMIM616251   
Gene and transcription
Genbank (Entrez)AB018281 AF086218 AF119896 AK001640 AK291605
RefSeq transcript (Entrez)NM_001206938 NM_001206941 NM_014719
Consensus coding sequences : CCDS (NCBI)TCAF1
Gene ExpressionTCAF1 [ NCBI-GEO ]   TCAF1 [ EBI - ARRAY_EXPRESS ]   TCAF1 [ SEEK ]   TCAF1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCAF1 [ Firebrowse - Broad ]
GenevisibleExpression of TCAF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9747
GTEX Portal (Tissue expression)TCAF1
Human Protein AtlasENSG00000198420-TCAF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4C2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4C2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4C2
PhosPhoSitePlusQ9Y4C2
Domaine pattern : Prosite (Expaxy)PEPTIDASE_M60 (PS51723)   
Domains : Interpro (EBI)Class_I_gatase-like    M60-like_N    Pep_M60_3    Peptidase_M60_dom   
Domain families : Pfam (Sanger)M60-like_N (PF17291)    Peptidase_M60 (PF13402)   
Domain families : Pfam (NCBI)pfam17291    pfam13402   
Domain families : Smart (EMBL)M60-like (SM01276)  
Conserved Domain (NCBI)TCAF1
SuperfamilyQ9Y4C2
AlphaFold pdb e-kbQ9Y4C2   
Human Protein Atlas [tissue]ENSG00000198420-TCAF1 [tissue]
HPRD13813
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4C2
IntAct (EBI)Q9Y4C2
BioGRIDTCAF1
STRING (EMBL)TCAF1
ZODIACTCAF1
Ontologies - Pathways
QuickGOQ9Y4C2
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  regulation of anion channel activity  negative regulation of cell migration  ion channel binding  ion channel binding  ion channel binding  positive regulation of protein targeting to membrane  positive regulation of protein targeting to membrane  positive regulation of anion channel activity  positive regulation of anion channel activity  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  regulation of anion channel activity  negative regulation of cell migration  ion channel binding  ion channel binding  ion channel binding  positive regulation of protein targeting to membrane  positive regulation of protein targeting to membrane  positive regulation of anion channel activity  positive regulation of anion channel activity  
NDEx NetworkTCAF1
Atlas of Cancer Signalling NetworkTCAF1
Wikipedia pathwaysTCAF1
Orthology - Evolution
OrthoDB9747
GeneTree (enSembl)ENSG00000198420
Phylogenetic Trees/Animal Genes : TreeFamTCAF1
Homologs : HomoloGeneTCAF1
Homology/Alignments : Family Browser (UCSC)TCAF1
Gene fusions - Rearrangements
Fusion : QuiverTCAF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCAF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCAF1
dbVarTCAF1
ClinVarTCAF1
MonarchTCAF1
1000_GenomesTCAF1 
Exome Variant ServerTCAF1
GNOMAD BrowserENSG00000198420
Varsome BrowserTCAF1
ACMGTCAF1 variants
VarityQ9Y4C2
Genomic Variants (DGV)TCAF1 [DGVbeta]
DECIPHERTCAF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCAF1 
Mutations
ICGC Data PortalTCAF1 
TCGA Data PortalTCAF1 
Broad Tumor PortalTCAF1
OASIS PortalTCAF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCAF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCAF1
Mutations and Diseases : HGMDTCAF1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCAF1
DgiDB (Drug Gene Interaction Database)TCAF1
DoCM (Curated mutations)TCAF1
CIViC (Clinical Interpretations of Variants in Cancer)TCAF1
Cancer3DTCAF1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616251   
Orphanet
DisGeNETTCAF1
MedgenTCAF1
Genetic Testing Registry TCAF1
NextProtQ9Y4C2 [Medical]
GENETestsTCAF1
Target ValidationTCAF1
Huge Navigator TCAF1 [HugePedia]
ClinGenTCAF1
Clinical trials, drugs, therapy
MyCancerGenomeTCAF1
Protein Interactions : CTDTCAF1
Pharm GKB GenePA162385749
PharosQ9Y4C2
Clinical trialTCAF1
Miscellaneous
canSAR (ICR)TCAF1
HarmonizomeTCAF1
DataMed IndexTCAF1
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:32 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.