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TCAF2 (TRPM8 channel associated factor 2)

Identity

Alias_namesFAM139A
FAM115C
family with sequence similarity 139, member A
family with sequence similarity 115, member C
TRPM8 channel-associated factor 2
Alias_symbol (synonym)FLJ40722
Other aliasGATD9
HGNC (Hugo) TCAF2
LocusID (NCBI) 285966
Atlas_Id 77401
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143620952 and ends at 143725083 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCAF2   26878
Cards
Entrez_Gene (NCBI)TCAF2  285966  TRPM8 channel associated factor 2
AliasesFAM115C; FAM139A; GATD9
GeneCards (Weizmann)TCAF2
Ensembl hg19 (Hinxton)ENSG00000170379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170379 [Gene_View]  chr7:143620952-143725083 [Contig_View]  TCAF2 [Vega]
ICGC DataPortalENSG00000170379
TCGA cBioPortalTCAF2
AceView (NCBI)TCAF2
Genatlas (Paris)TCAF2
WikiGenes285966
SOURCE (Princeton)TCAF2
Genetics Home Reference (NIH)TCAF2
Genomic and cartography
GoldenPath hg38 (UCSC)TCAF2  -     chr7:143620952-143725083 +  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCAF2  -     7q35   [Description]    (hg19-Feb_2009)
EnsemblTCAF2 - 7q35 [CytoView hg19]  TCAF2 - 7q35 [CytoView hg38]
Mapping of homologs : NCBITCAF2 [Mapview hg19]  TCAF2 [Mapview hg38]
OMIM616252   
Gene and transcription
Genbank (Entrez)AK090395 AK098041 AK296318 AL832734 AY167570
RefSeq transcript (Entrez)NM_001130025 NM_001130026 NM_173678
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCAF2
Cluster EST : UnigeneHs.743565 [ NCBI ]
CGAP (NCI)Hs.743565
Alternative Splicing GalleryENSG00000170379
Gene ExpressionTCAF2 [ NCBI-GEO ]   TCAF2 [ EBI - ARRAY_EXPRESS ]   TCAF2 [ SEEK ]   TCAF2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCAF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285966
GTEX Portal (Tissue expression)TCAF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFQ2
Splice isoforms : SwissVarA6NFQ2
PhosPhoSitePlusA6NFQ2
Domaine pattern : Prosite (Expaxy)PEPTIDASE_M60 (PS51723)   
Domains : Interpro (EBI)Class_I_gatase-like    Peptidase_M60_dom   
Domain families : Pfam (Sanger)Peptidase_M60 (PF13402)   
Domain families : Pfam (NCBI)pfam13402   
Domain families : Smart (EMBL)M60-like (SM01276)  
Conserved Domain (NCBI)TCAF2
DMDM Disease mutations285966
Blocks (Seattle)TCAF2
SuperfamilyA6NFQ2
Human Protein AtlasENSG00000170379
Peptide AtlasA6NFQ2
HPRD07117
IPIIPI00783877   IPI00293161   IPI00916642   IPI00909561   
Protein Interaction databases
DIP (DOE-UCLA)A6NFQ2
IntAct (EBI)A6NFQ2
FunCoupENSG00000170379
BioGRIDTCAF2
STRING (EMBL)TCAF2
ZODIACTCAF2
Ontologies - Pathways
QuickGOA6NFQ2
Ontology : AmiGOplasma membrane  transport  negative regulation of anion channel activity  positive regulation of cell migration  ion channel binding  ion channel binding  positive regulation of protein targeting to membrane  
Ontology : EGO-EBIplasma membrane  transport  negative regulation of anion channel activity  positive regulation of cell migration  ion channel binding  ion channel binding  positive regulation of protein targeting to membrane  
NDEx NetworkTCAF2
Atlas of Cancer Signalling NetworkTCAF2
Wikipedia pathwaysTCAF2
Orthology - Evolution
OrthoDB285966
GeneTree (enSembl)ENSG00000170379
Phylogenetic Trees/Animal Genes : TreeFamTCAF2
HOVERGENA6NFQ2
HOGENOMA6NFQ2
Homologs : HomoloGeneTCAF2
Homology/Alignments : Family Browser (UCSC)TCAF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCAF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCAF2
dbVarTCAF2
ClinVarTCAF2
1000_GenomesTCAF2 
Exome Variant ServerTCAF2
ExAC (Exome Aggregation Consortium)TCAF2 (select the gene name)
Genetic variants : HAPMAP285966
Genomic Variants (DGV)TCAF2 [DGVbeta]
DECIPHERTCAF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCAF2 
Mutations
ICGC Data PortalTCAF2 
TCGA Data PortalTCAF2 
Broad Tumor PortalTCAF2
OASIS PortalTCAF2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTCAF2
BioMutasearch TCAF2
DgiDB (Drug Gene Interaction Database)TCAF2
DoCM (Curated mutations)TCAF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCAF2 (select a term)
intoGenTCAF2
Cancer3DTCAF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616252   
Orphanet
MedgenTCAF2
Genetic Testing Registry TCAF2
NextProtA6NFQ2 [Medical]
TSGene285966
GENETestsTCAF2
Target ValidationTCAF2
Huge Navigator TCAF2 [HugePedia]
snp3D : Map Gene to Disease285966
BioCentury BCIQTCAF2
ClinGenTCAF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285966
Chemical/Pharm GKB GenePA162385772
Clinical trialTCAF2
Miscellaneous
canSAR (ICR)TCAF2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCAF2
EVEXTCAF2
GoPubMedTCAF2
iHOPTCAF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:02 CEST 2017

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