Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCAF2 (TRPM8 channel-associated factor 2)

Identity

Alias_namesFAM139A
FAM115C
family with sequence similarity 139, member A
family with sequence similarity 115, member C
TRPM8 channel-associated factor 2
Alias_symbol (synonym)FLJ40722
Other alias
HGNC (Hugo) TCAF2
LocusID (NCBI) 285966
Atlas_Id 77401
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143318045 and ends at 143422176 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TCAF2   26878
Cards
Entrez_Gene (NCBI)TCAF2  285966  TRPM8 channel-associated factor 2
AliasesFAM115C; FAM139A
GeneCards (Weizmann)TCAF2
Ensembl hg19 (Hinxton)ENSG00000170379 [Gene_View]  chr7:143318045-143422176 [Contig_View]  TCAF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170379 [Gene_View]  chr7:143318045-143422176 [Contig_View]  TCAF2 [Vega]
ICGC DataPortalENSG00000170379
TCGA cBioPortalTCAF2
AceView (NCBI)TCAF2
Genatlas (Paris)TCAF2
WikiGenes285966
SOURCE (Princeton)TCAF2
Genetics Home Reference (NIH)TCAF2
Genomic and cartography
GoldenPath hg19 (UCSC)TCAF2  -     chr7:143318045-143422176 +  7q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCAF2  -     7q35   [Description]    (hg38-Dec_2013)
EnsemblTCAF2 - 7q35 [CytoView hg19]  TCAF2 - 7q35 [CytoView hg38]
Mapping of homologs : NCBITCAF2 [Mapview hg19]  TCAF2 [Mapview hg38]
OMIM616252   
Gene and transcription
Genbank (Entrez)AK090395 AK098041 AK296318 AL832734 AY167570
RefSeq transcript (Entrez)NM_001130025 NM_001130026 NM_173678
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)TCAF2
Cluster EST : UnigeneHs.743565 [ NCBI ]
CGAP (NCI)Hs.743565
Alternative Splicing GalleryENSG00000170379
Gene ExpressionTCAF2 [ NCBI-GEO ]   TCAF2 [ EBI - ARRAY_EXPRESS ]   TCAF2 [ SEEK ]   TCAF2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCAF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285966
GTEX Portal (Tissue expression)TCAF2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TCAF2
DMDM Disease mutations285966
Blocks (Seattle)TCAF2
Human Protein AtlasENSG00000170379
HPRD07117
IPIIPI00783877   IPI00293161   IPI00916642   IPI00909561   
Protein Interaction databases
FunCoupENSG00000170379
BioGRIDTCAF2
STRING (EMBL)TCAF2
ZODIACTCAF2
Ontologies - Pathways
Huge Navigator TCAF2 [HugePedia]
snp3D : Map Gene to Disease285966
BioCentury BCIQTCAF2
ClinGenTCAF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285966
Chemical/Pharm GKB GenePA162385772
Clinical trialTCAF2
Miscellaneous
canSAR (ICR)TCAF2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCAF2
EVEXTCAF2
GoPubMedTCAF2
iHOPTCAF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:37 CET 2017

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