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TCEA1 (transcription elongation factor A (SII), 1)

Identity

Other namesGTF2S
SII
TCEA
TF2S
TFIIS
HGNC (Hugo) TCEA1
Location 8q11.23
Location_base_pair Starts at 55041669 and ends at 55097561 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TCEA1   11612
Entrez_Gene (NCBI)TCEA1  6917  transcription elongation factor A (SII), 1
Cards
GeneCards (Weizmann)TCEA1
Ensembl (Hinxton)ENSG00000187735 [Gene_View]  TCEA1 [Vega]
AceView (NCBI)TCEA1
Genatlas (Paris)TCEA1
euGene (Indiana)6917
SOURCE (Stanford)NM_006756 NM_201437
Gene Expression (Array Express) ENSG00000187735
Genomic and cartography
GoldenPath (UCSC)TCEA1  -  8q11.23   chr8:55041669-55097561 -  8q11.23   [Description]    (hg18-March_2006)
EnsemblTCEA1 - 8q11.23 [CytoView]
Mapping of homologs : NCBITCEA1 [Mapview]
OMIM601425   
Gene and transcription
Gene : Genbank (Entrez)AK026617 AK094425 AK290454 AK297729 AK297957
Reference sequence (RefSeq transcript) :SRSNM_006756 NM_201437
Reference transcript : EntrezNM_006756 NM_201437
RefSeq genomic : SRSAC_000046 AC_000140 NC_000008 NT_008183 NW_001839132 NW_921651
RefSeq genomic : EntrezAC_000046 AC_000140 NC_000008 NT_008183 NW_001839132 NW_921651
Consensus coding sequences : CCDS NCBITCEA1
Cluster EST : UnigeneHs.491745 [ SRS ] Hs.491745 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5213
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP23193 (SRS) P23193 (Expasy) P23193 (Uniprot)
With graphics : InterProP23193
Splice isoforms : VarSplice FASTAP23193(VarSplice FASTA)
Domaine pattern : Prosite (SRS)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)    ZF_TFIIS_1 (PS00466)    ZF_TFIIS_2 (PS51133)   
Domain pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)    ZF_TFIIS_1 (PS00466)    ZF_TFIIS_2 (PS51133)   
Domains : Interpro (SRS)TF_IIS    TFIIS/CRSP70_N    TFIIS/CRSP70_N_sub    TFIIS/elonginA/CRSP70_N    TFIIS_cen_dom    TFIIS_N    TFS2M    TFSII    Znf_TFIIS   
Domains : Interpro (EBI)TF_IIS    TFIIS/CRSP70_N    TFIIS/CRSP70_N_sub    TFIIS/elonginA/CRSP70_N    TFIIS_cen_dom    TFIIS_N    TFS2M    TFSII    Znf_TFIIS   
Related proteins : CluSTrP23193
Domain families : Pfam SRSTFIIS (PF08711)    TFIIS_C (PF01096)    TFIIS_M (PF07500)   
Domain families : Pfam SangerTFIIS (PF08711)    TFIIS_C (PF01096)    TFIIS_M (PF07500)   
Domain families : Pfam NCBIpfam08711    pfam01096    pfam07500   
Domain families : Smart EMBLTFS2M (SM00510)  TFS2N (SM00509)  ZnF_C2C2 (SM00440)  
Blocks (Seattle)P23193
Crystal structure of protein : PDB SRS1TFI   
Crystal structure of protein : PDBSum1TFI   
Crystal structure of protein : IMB1TFI   
Crystal structure of protein : PDB RSDB1TFI   
HPRD03252
Protein Interaction databases
DIP (DOE-UCLA)P23193
IntAct (EBI)P23193
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBITCEA1
SNP : GeneSNP UtahTCEA1
SNP : HGBaseTCEA1
Genetic variants : HAPMAPTCEA1
Cancer Gene: CensusTCEA1 
Somatic Mutations in Cancer : COSMICTCEA1 
Translocation Breakpoints in Cancer : TICdbDNA 
Mutations and Diseases : HGMDTCEA1
Hereditary diseases : OMIM601425   
Hereditary diseases : GENETests601425   
Diseases : Genetic AssociationTCEA1
General knowledge
Homologs : HomoloGeneTCEA1
Homology/Alignments : Family Browser UCSCTCEA1
Phylogenetic Trees/Animal Genes : TreeFamTCEA1
Chemical/Protein Interactions : CTD6917
Keywords Ontology : AmiGODNA binding  transcription elongation regulator activity  translation elongation factor activity  protein binding  nucleus  nucleoplasm  RNA elongation  zinc ion binding  general RNA polymerase II transcription factor activity  erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Keywords Ontology : EGO-EBIDNA binding  transcription elongation regulator activity  translation elongation factor activity  protein binding  nucleus  nucleoplasm  RNA elongation  zinc ion binding  general RNA polymerase II transcription factor activity  erythrocyte differentiation  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesTCEA1 Related clones (RZPD - Berlin)
Literature
PubMed32 Pubmed reference(s) in Entrez
PubGeneTCEA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

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indexed on : Sat Feb 27 10:34:01 CET 2010
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