TCEA1 (transcription elongation factor A (SII), 1)

Identity

Other names	GTF2S
	SII
	TCEA
	TF2S
	TFIIS
HGNC	TCEA1
Location	8q11.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	TCEA1   11612
Entrez_Gene	TCEA1  6917  transcription elongation factor A (SII), 1
	Cards
GeneCards	TCEA1
Ensembl	TCEA1 [Search_View]   ENSG00000059377 [Gene_View]
Genatlas	TCEA1
GeneLynx	TCEA1
eGenome	TCEA1
euGene	6917
	Genomic and cartography
GoldenPath	TCEA1  -  8q11.2   chr8:55041669-55097561 -  8q11.23   [Description]    (hg18-March_2006)
Ensembl	TCEA1 - 8q11.23 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TCEA1
	Gene and transcription
Genbank	AK026617 [ ENTREZ ]
Genbank	AK094425 [ ENTREZ ]
Genbank	AK290454 [ ENTREZ ]
Genbank	AU125645 [ ENTREZ ]
Genbank	AU280634 [ ENTREZ ]
RefSeq	NM_006756 [ SRS ]    NM_006756 [ ENTREZ ]
RefSeq	NM_201437 [ SRS ]    NM_201437 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_008183 [ SRS ]    NT_008183 [ ENTREZ ]
RefSeq	NW_001839132 [ SRS ]    NW_001839132 [ ENTREZ ]
RefSeq	NW_923929 [ SRS ]    NW_923929 [ ENTREZ ]
AceView	TCEA1 AceView - NCBI
Unigene	Hs.491745 [ SRS ]    Hs.491745 [ NCBI ]     HS491745 [ spliceNest ]
Fast-db	5213 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P23193 [ SRS]    P23193 [ EXPASY ]     P23193 [ INTERPRO ]     P23193 [ UNIPROT ]
Prosite	PS51321 TFIIS_CENTRAL [ SRS ]    PS51321 TFIIS_CENTRAL [ Expasy ]
Prosite	PS51319 TFIIS_N [ SRS ]    PS51319 TFIIS_N [ Expasy ]
Prosite	PS00466 ZF_TFIIS_1 [ SRS ]    PS00466 ZF_TFIIS_1 [ Expasy ]
Prosite	PS51133 ZF_TFIIS_2 [ SRS ]    PS51133 ZF_TFIIS_2 [ Expasy ]
Interpro	IPR016492 TF_IIS [ SRS ]    IPR016492 TF_IIS [ EBI ]
Interpro	IPR014765 TFIIS/CRSP70_N [ SRS ]    IPR014765 TFIIS/CRSP70_N [ EBI ]
Interpro	IPR003617 TFIIS/CRSP70_N_sub [ SRS ]    IPR003617 TFIIS/CRSP70_N_sub [ EBI ]
Interpro	IPR010990 TFIIS/elonginA/CRSP70_N [ SRS ]    IPR010990 TFIIS/elonginA/CRSP70_N [ EBI ]
Interpro	IPR003618 TFIIS_centre [ SRS ]    IPR003618 TFIIS_centre [ EBI ]
Interpro	IPR006289 TFSII [ SRS ]    IPR006289 TFSII [ EBI ]
Interpro	IPR001222 Znf_TFIIS [ SRS ]    IPR001222 Znf_TFIIS [ EBI ]
CluSTr	P23193
Pfam	PF08711 TFIIS [ SRS ]    PF08711 TFIIS [ Sanger ]    pfam08711 [ NCBI-CDD ]
Pfam	PF01096 TFIIS_C [ SRS ]    PF01096 TFIIS_C [ Sanger ]    pfam01096 [ NCBI-CDD ]
Pfam	PF07500 TFIIS_M [ SRS ]    PF07500 TFIIS_M [ Sanger ]    pfam07500 [ NCBI-CDD ]
Smart	SM00510 TFS2M [EMBL]
Smart	SM00509 TFS2N [EMBL]
Smart	SM00440 ZnF_C2C2 [EMBL]
Blocks	P23193
PDB	1TFI [ SRS ]    1TFI [ PdbSum ],   1TFI [ IMB ]   1TFI [ RSDB ]
HPRD	03252
	Protein Interaction databases
DIP	P23193
IntAct	P23193
	Polymorphism : SNP, mutations, diseases
OMIM	601425    [ map ]
GENECLINICS	601425
SNP	TCEA1 [dbSNP-NCBI]
SNP	NM_006756 [SNP-NCI]
SNP	NM_201437 [SNP-NCI]
SNP	TCEA1 [GeneSNPs - Utah]  TCEA1] [HGBASE - SRS]
HAPMAP	TCEA1 [HAPMAP]
COSMIC	TCEA1 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	DNA [Translocation breakpoints In Cancer]
HGMD	TCEA1
	General knowledge
Family Browser	TCEA1 [UCSC Family Browser]
SOURCE	NM_006756
SOURCE	NM_201437
SMD	Hs.491745
SAGE	Hs.491745
GO	DNA binding [Amigo]  DNA binding
GO	transcription elongation regulator activity [Amigo]  transcription elongation regulator activity
GO	translation elongation factor activity [Amigo]  translation elongation factor activity
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	nucleoplasm [Amigo]  nucleoplasm
GO	RNA elongation [Amigo]  RNA elongation
GO	regulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GO	zinc ion binding [Amigo]  zinc ion binding
GO	general RNA polymerase II transcription factor activity [Amigo]  general RNA polymerase II transcription factor activity
GO	metal ion binding [Amigo]  metal ion binding
PubGene	TCEA1
TreeFam	TCEA1
CTD	6917 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TCEA1 Related clones (RZPD - Berlin)
	PubMed
PubMed	32 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:34:27 2008