Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCEA1 (transcription elongation factor A1)

Identity

Alias (NCBI)GTF2S
SII
TCEA
TF2S
TFIIS
HGNC (Hugo) TCEA1
HGNC Alias symbSII
TF2S
TFIIS
HGNC Alias nametranscription factor IIS
HGNC Previous nameTCEA
 GTF2S
HGNC Previous nametranscription elongation factor A (SII), 1
LocusID (NCBI) 6917
Atlas_Id 409
Location 8q11.23  [Link to chromosome band 8q11]
Location_base_pair Starts at 53966556 and ends at 54022448 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLAG1 (8q12.1) / TCEA1 (8q11.23)TCEA1 (8q11.23) / PLAG1 (8q12.1)TCEA1 8q11.23 / PLAG1 8q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCEA1   11612
Cards
Entrez_Gene (NCBI)TCEA1    transcription elongation factor A1
AliasesGTF2S; SII; TCEA; TF2S; 
TFIIS
GeneCards (Weizmann)TCEA1
Ensembl hg19 (Hinxton)ENSG00000187735 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187735 [Gene_View]  ENSG00000187735 [Sequence]  chr8:53966556-54022448 [Contig_View]  TCEA1 [Vega]
ICGC DataPortalENSG00000187735
TCGA cBioPortalTCEA1
AceView (NCBI)TCEA1
Genatlas (Paris)TCEA1
SOURCE (Princeton)TCEA1
Genetics Home Reference (NIH)TCEA1
Genomic and cartography
GoldenPath hg38 (UCSC)TCEA1  -     chr8:53966556-54022448 -  8q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEA1  -     8q11.23   [Description]    (hg19-Feb_2009)
GoldenPathTCEA1 - 8q11.23 [CytoView hg19]  TCEA1 - 8q11.23 [CytoView hg38]
ImmunoBaseENSG00000187735
Genome Data Viewer NCBITCEA1 [Mapview hg19]  
OMIM601425   
Gene and transcription
Genbank (Entrez)AK026617 AK094425 AK290454 AK297729 AK297957
RefSeq transcript (Entrez)NM_006756 NM_201437
Consensus coding sequences : CCDS (NCBI)TCEA1
Gene ExpressionTCEA1 [ NCBI-GEO ]   TCEA1 [ EBI - ARRAY_EXPRESS ]   TCEA1 [ SEEK ]   TCEA1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEA1 [ Firebrowse - Broad ]
GenevisibleExpression of TCEA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6917
GTEX Portal (Tissue expression)TCEA1
Human Protein AtlasENSG00000187735-TCEA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23193   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23193  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23193
PhosPhoSitePlusP23193
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)    ZF_TFIIS_1 (PS00466)    ZF_TFIIS_2 (PS51133)   
Domains : Interpro (EBI)TF_IIS-typ    TFIIS/CRSP70_N_sub    TFIIS/LEDGF_dom_sf    TFIIS_cen_dom    TFIIS_cen_dom_sf    TFIIS_N    TFSII    Znf_TFIIS   
Domain families : Pfam (Sanger)Med26 (PF08711)    TFIIS_C (PF01096)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam08711    pfam01096    pfam07500   
Domain families : Smart (EMBL)TFS2M (SM00510)  TFS2N (SM00509)  ZnF_C2C2 (SM00440)  
Conserved Domain (NCBI)TCEA1
PDB (RSDB)1TFI    3NDQ    5IY6    5IY7    5IY8    5IYA    5IYB    5IYC    6O9L   
PDB Europe1TFI    3NDQ    5IY6    5IY7    5IY8    5IYA    5IYB    5IYC    6O9L   
PDB (PDBSum)1TFI    3NDQ    5IY6    5IY7    5IY8    5IYA    5IYB    5IYC    6O9L   
PDB (IMB)1TFI    3NDQ    5IY6    5IY7    5IY8    5IYA    5IYB    5IYC    6O9L   
Structural Biology KnowledgeBase1TFI    3NDQ    5IY6    5IY7    5IY8    5IYA    5IYB    5IYC    6O9L   
SCOP (Structural Classification of Proteins)1TFI    3NDQ    5IY6    5IY7    5IY8    5IYA    5IYB    5IYC    6O9L   
CATH (Classification of proteins structures)1TFI    3NDQ    5IY6    5IY7    5IY8    5IYA    5IYB    5IYC    6O9L   
SuperfamilyP23193
AlphaFold pdb e-kbP23193   
Human Protein Atlas [tissue]ENSG00000187735-TCEA1 [tissue]
HPRD03252
Protein Interaction databases
DIP (DOE-UCLA)P23193
IntAct (EBI)P23193
BioGRIDTCEA1
STRING (EMBL)TCEA1
ZODIACTCEA1
Ontologies - Pathways
QuickGOP23193
Ontology : AmiGODNA binding  protein binding  nucleoplasm  nucleoplasm  transcription factor TFIID complex  nucleolus  transcription-coupled nucleotide-excision repair  transcription by RNA polymerase II  transcription elongation from RNA polymerase II promoter  zinc ion binding  positive regulation of transcription by RNA polymerase II  positive regulation of exoribonuclease activity  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  nucleoplasm  transcription factor TFIID complex  nucleolus  transcription-coupled nucleotide-excision repair  transcription by RNA polymerase II  transcription elongation from RNA polymerase II promoter  zinc ion binding  positive regulation of transcription by RNA polymerase II  positive regulation of exoribonuclease activity  
NDEx NetworkTCEA1
Atlas of Cancer Signalling NetworkTCEA1
Wikipedia pathwaysTCEA1
Orthology - Evolution
OrthoDB6917
GeneTree (enSembl)ENSG00000187735
Phylogenetic Trees/Animal Genes : TreeFamTCEA1
Homologs : HomoloGeneTCEA1
Homology/Alignments : Family Browser (UCSC)TCEA1
Gene fusions - Rearrangements
Fusion : MitelmanTCEA1/PLAG1 [8q11.23/8q12.1]  
Fusion : QuiverTCEA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEA1
dbVarTCEA1
ClinVarTCEA1
MonarchTCEA1
1000_GenomesTCEA1 
Exome Variant ServerTCEA1
GNOMAD BrowserENSG00000187735
Varsome BrowserTCEA1
ACMGTCEA1 variants
VarityP23193
Genomic Variants (DGV)TCEA1 [DGVbeta]
DECIPHERTCEA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEA1 
Mutations
ICGC Data PortalTCEA1 
TCGA Data PortalTCEA1 
Broad Tumor PortalTCEA1
OASIS PortalTCEA1 [ Somatic mutations - Copy number]
Cancer Gene: CensusTCEA1 
Somatic Mutations in Cancer : COSMICTCEA1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCEA1
Mutations and Diseases : HGMDTCEA1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCEA1
DgiDB (Drug Gene Interaction Database)TCEA1
DoCM (Curated mutations)TCEA1
CIViC (Clinical Interpretations of Variants in Cancer)TCEA1
Cancer3DTCEA1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601425   
Orphanet
DisGeNETTCEA1
MedgenTCEA1
Genetic Testing Registry TCEA1
NextProtP23193 [Medical]
GENETestsTCEA1
Target ValidationTCEA1
Huge Navigator TCEA1 [HugePedia]
ClinGenTCEA1
Clinical trials, drugs, therapy
MyCancerGenomeTCEA1
Protein Interactions : CTDTCEA1
Pharm GKB GenePA36371
PharosP23193
Clinical trialTCEA1
Miscellaneous
canSAR (ICR)TCEA1
HarmonizomeTCEA1
DataMed IndexTCEA1
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCEA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:32 CEST 2021

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