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TCEA2 (transcription elongation factor A2)

Identity

Alias_namestranscription elongation factor A (SII), 2
Alias_symbol (synonym)TFIIS
Other alias
HGNC (Hugo) TCEA2
LocusID (NCBI) 6919
Atlas_Id 74562
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64063128 and ends at 64072347 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEA2   11614
Cards
Entrez_Gene (NCBI)TCEA2  6919  transcription elongation factor A2
AliasesTFIIS
GeneCards (Weizmann)TCEA2
Ensembl hg19 (Hinxton)ENSG00000171703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171703 [Gene_View]  chr20:64063128-64072347 [Contig_View]  TCEA2 [Vega]
ICGC DataPortalENSG00000171703
TCGA cBioPortalTCEA2
AceView (NCBI)TCEA2
Genatlas (Paris)TCEA2
WikiGenes6919
SOURCE (Princeton)TCEA2
Genetics Home Reference (NIH)TCEA2
Genomic and cartography
GoldenPath hg38 (UCSC)TCEA2  -     chr20:64063128-64072347 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEA2  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblTCEA2 - 20q13.33 [CytoView hg19]  TCEA2 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBITCEA2 [Mapview hg19]  TCEA2 [Mapview hg38]
OMIM604784   
Gene and transcription
Genbank (Entrez)AJ844626 AJ844627 AK027824 AK226140 AW474513
RefSeq transcript (Entrez)NM_003195 NM_198723
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEA2
Cluster EST : UnigeneHs.736326 [ NCBI ]
CGAP (NCI)Hs.736326
Alternative Splicing GalleryENSG00000171703
Gene ExpressionTCEA2 [ NCBI-GEO ]   TCEA2 [ EBI - ARRAY_EXPRESS ]   TCEA2 [ SEEK ]   TCEA2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6919
GTEX Portal (Tissue expression)TCEA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15560   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15560  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15560
Splice isoforms : SwissVarQ15560
PhosPhoSitePlusQ15560
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)    ZF_TFIIS_1 (PS00466)    ZF_TFIIS_2 (PS51133)   
Domains : Interpro (EBI)TF_IIS-rel    TFIIS/CRSP70_N_sub    TFIIS_cen_dom    TFIIS_N    TFSII    Znf_TFIIS   
Domain families : Pfam (Sanger)Med26 (PF08711)    TFIIS_C (PF01096)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam08711    pfam01096    pfam07500   
Domain families : Smart (EMBL)TFS2M (SM00510)  TFS2N (SM00509)  ZnF_C2C2 (SM00440)  
Conserved Domain (NCBI)TCEA2
DMDM Disease mutations6919
Blocks (Seattle)TCEA2
PDB (SRS)2LW4   
PDB (PDBSum)2LW4   
PDB (IMB)2LW4   
PDB (RSDB)2LW4   
Structural Biology KnowledgeBase2LW4   
SCOP (Structural Classification of Proteins)2LW4   
CATH (Classification of proteins structures)2LW4   
SuperfamilyQ15560
Human Protein AtlasENSG00000171703
Peptide AtlasQ15560
HPRD16069
IPIIPI00018403   IPI00384330   IPI00646348   IPI00647399   IPI00643225   
Protein Interaction databases
DIP (DOE-UCLA)Q15560
IntAct (EBI)Q15560
FunCoupENSG00000171703
BioGRIDTCEA2
STRING (EMBL)TCEA2
ZODIACTCEA2
Ontologies - Pathways
QuickGOQ15560
Ontology : AmiGODNA binding  protein binding  DNA-templated transcription, elongation  transcription elongation factor complex  zinc ion binding  regulation of DNA-templated transcription, elongation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIDNA binding  protein binding  DNA-templated transcription, elongation  transcription elongation factor complex  zinc ion binding  regulation of DNA-templated transcription, elongation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkTCEA2
Atlas of Cancer Signalling NetworkTCEA2
Wikipedia pathwaysTCEA2
Orthology - Evolution
OrthoDB6919
GeneTree (enSembl)ENSG00000171703
Phylogenetic Trees/Animal Genes : TreeFamTCEA2
HOVERGENQ15560
HOGENOMQ15560
Homologs : HomoloGeneTCEA2
Homology/Alignments : Family Browser (UCSC)TCEA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEA2
dbVarTCEA2
ClinVarTCEA2
1000_GenomesTCEA2 
Exome Variant ServerTCEA2
ExAC (Exome Aggregation Consortium)TCEA2 (select the gene name)
Genetic variants : HAPMAP6919
Genomic Variants (DGV)TCEA2 [DGVbeta]
DECIPHERTCEA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEA2 
Mutations
ICGC Data PortalTCEA2 
TCGA Data PortalTCEA2 
Broad Tumor PortalTCEA2
OASIS PortalTCEA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEA2
DgiDB (Drug Gene Interaction Database)TCEA2
DoCM (Curated mutations)TCEA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEA2 (select a term)
intoGenTCEA2
Cancer3DTCEA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604784   
Orphanet
MedgenTCEA2
Genetic Testing Registry TCEA2
NextProtQ15560 [Medical]
TSGene6919
GENETestsTCEA2
Huge Navigator TCEA2 [HugePedia]
snp3D : Map Gene to Disease6919
BioCentury BCIQTCEA2
ClinGenTCEA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6919
Chemical/Pharm GKB GenePA36373
Clinical trialTCEA2
Miscellaneous
canSAR (ICR)TCEA2 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEA2
EVEXTCEA2
GoPubMedTCEA2
iHOPTCEA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:57:33 CEST 2017

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