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TCEA3 (transcription elongation factor A3)

Identity

Alias_namestranscription elongation factor A (SII)
Alias_symbol (synonym)TFIIS.H
Other aliasTFIIS
HGNC (Hugo) TCEA3
LocusID (NCBI) 6920
Atlas_Id 55847
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 23380909 and ends at 23424779 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
H19 (11p15.5) / TCEA3 (1p36.12)PRICKLE2 (3p14.1) / TCEA3 (1p36.12)TCEA3 (1p36.12) / TCEA3 (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEA3   11615
Cards
Entrez_Gene (NCBI)TCEA3  6920  transcription elongation factor A3
AliasesTFIIS; TFIIS.H
GeneCards (Weizmann)TCEA3
Ensembl hg19 (Hinxton)ENSG00000204219 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204219 [Gene_View]  chr1:23380909-23424779 [Contig_View]  TCEA3 [Vega]
ICGC DataPortalENSG00000204219
TCGA cBioPortalTCEA3
AceView (NCBI)TCEA3
Genatlas (Paris)TCEA3
WikiGenes6920
SOURCE (Princeton)TCEA3
Genetics Home Reference (NIH)TCEA3
Genomic and cartography
GoldenPath hg38 (UCSC)TCEA3  -     chr1:23380909-23424779 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEA3  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblTCEA3 - 1p36.12 [CytoView hg19]  TCEA3 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBITCEA3 [Mapview hg19]  TCEA3 [Mapview hg38]
OMIM604128   
Gene and transcription
Genbank (Entrez)AA873235 AJ223473 AK027024 AK290272 AK300707
RefSeq transcript (Entrez)NM_003196
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEA3
Cluster EST : UnigeneHs.446354 [ NCBI ]
CGAP (NCI)Hs.446354
Alternative Splicing GalleryENSG00000204219
Gene ExpressionTCEA3 [ NCBI-GEO ]   TCEA3 [ EBI - ARRAY_EXPRESS ]   TCEA3 [ SEEK ]   TCEA3 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6920
GTEX Portal (Tissue expression)TCEA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75764   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75764  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75764
Splice isoforms : SwissVarO75764
PhosPhoSitePlusO75764
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)    ZF_TFIIS_1 (PS00466)    ZF_TFIIS_2 (PS51133)   
Domains : Interpro (EBI)TF_IIS-rel    TFIIS/CRSP70_N_sub    TFIIS_cen_dom    TFIIS_N    TFSII    Znf_TFIIS   
Domain families : Pfam (Sanger)Med26 (PF08711)    TFIIS_C (PF01096)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam08711    pfam01096    pfam07500   
Domain families : Smart (EMBL)TFS2M (SM00510)  TFS2N (SM00509)  ZnF_C2C2 (SM00440)  
Conserved Domain (NCBI)TCEA3
DMDM Disease mutations6920
Blocks (Seattle)TCEA3
SuperfamilyO75764
Human Protein AtlasENSG00000204219
Peptide AtlasO75764
HPRD16036
IPIIPI00178146   IPI01012612   
Protein Interaction databases
DIP (DOE-UCLA)O75764
IntAct (EBI)O75764
FunCoupENSG00000204219
BioGRIDTCEA3
STRING (EMBL)TCEA3
ZODIACTCEA3
Ontologies - Pathways
QuickGOO75764
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkTCEA3
Atlas of Cancer Signalling NetworkTCEA3
Wikipedia pathwaysTCEA3
Orthology - Evolution
OrthoDB6920
GeneTree (enSembl)ENSG00000204219
Phylogenetic Trees/Animal Genes : TreeFamTCEA3
HOVERGENO75764
HOGENOMO75764
Homologs : HomoloGeneTCEA3
Homology/Alignments : Family Browser (UCSC)TCEA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEA3
dbVarTCEA3
ClinVarTCEA3
1000_GenomesTCEA3 
Exome Variant ServerTCEA3
ExAC (Exome Aggregation Consortium)TCEA3 (select the gene name)
Genetic variants : HAPMAP6920
Genomic Variants (DGV)TCEA3 [DGVbeta]
DECIPHERTCEA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEA3 
Mutations
ICGC Data PortalTCEA3 
TCGA Data PortalTCEA3 
Broad Tumor PortalTCEA3
OASIS PortalTCEA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEA3
DgiDB (Drug Gene Interaction Database)TCEA3
DoCM (Curated mutations)TCEA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEA3 (select a term)
intoGenTCEA3
Cancer3DTCEA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604128   
Orphanet
MedgenTCEA3
Genetic Testing Registry TCEA3
NextProtO75764 [Medical]
TSGene6920
GENETestsTCEA3
Target ValidationTCEA3
Huge Navigator TCEA3 [HugePedia]
snp3D : Map Gene to Disease6920
BioCentury BCIQTCEA3
ClinGenTCEA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6920
Chemical/Pharm GKB GenePA36374
Clinical trialTCEA3
Miscellaneous
canSAR (ICR)TCEA3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEA3
EVEXTCEA3
GoPubMedTCEA3
iHOPTCEA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:16:34 CEST 2017

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