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TCEAL1 (transcription elongation factor A (SII)-like 1)

Identity

Other namesSIIR
p21
pp21
HGNC (Hugo) TCEAL1
LocusID (NCBI) 9338
Location Xq22.2
Location_base_pair Starts at 102883892 and ends at 102885876 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TCEAL1   11616
Entrez_Gene (NCBI)TCEAL1  9338  transcription elongation factor A (SII)-like 1
Cards
GeneCards (Weizmann)TCEAL1
Ensembl (Hinxton)ENSG00000172465 [Gene_View]  chrX:102883892-102885876 [Contig_View]  TCEAL1 [Vega]
AceView (NCBI)TCEAL1
Genatlas (Paris)TCEAL1
SOURCE (Stanford)NM_001006639 NM_001006640 NM_004780
Genomic and cartography
GoldenPath (UCSC)TCEAL1  -  Xq22.2   chrX:102883892-102885876 +  Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblTCEAL1 - Xq22.2 [CytoView]
Mapping of homologs : NCBITCEAL1 [Mapview]
OMIM300237   
Gene and transcription
Genbank (Entrez)BC000809 BM784458 BU602495 BX092470 CB053221
RefSeq transcript (SRS)NM_001006639 NM_001006640 NM_004780
RefSeq transcript (Entrez)NM_001006639 NM_001006640 NM_004780
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NT_011651 NW_001842389 NW_004078123
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NT_011651 NW_001842389 NW_004078123
Consensus coding sequences : CCDS (NCBI)TCEAL1
Cluster EST : UnigeneHs.95243 [ SRS ] Hs.95243 [ NCBI ]
CGAP (NCI)Hs.95243
Alternative Splicing : Fast-db (Paris)GSHG0031711
Alternative Splicing GalleryENSG00000172465
Gene ExpressionTCEAL1 [ NCBI-GEO ]   TCEAL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15170 (SRS) Q15170 (Uniprot)
NextProtQ15170
With graphics : InterProQ15170
Splice isoforms : SwissVarQ15170(Swissvar)
Domains : Interpro (SRS)TF_A-like/BEX-like    TFA   
Domains : Interpro (EBI)TF_A-like/BEX-like    TFA   
Related proteins : CluSTrQ15170
Domain families : Pfam (SRS)BEX (PF04538)   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
DMDM9338
Blocks (Seattle)Q15170
Human Protein AtlasENSG00000172465
HPRD02211
IPIIPI00759507   IPI00477802   IPI01018642   
Protein Interaction databases
DIP (DOE-UCLA)Q15170
IntAct (EBI)Q15170
FunCoupENSG00000172465
REACTOMETCEAL1
Protein Interaction Database9338
BioGRIDTCEAL1
InParanoidQ15170
Interologous Interaction database Q15170
IntegromeDBTCEAL1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TCEAL1
SNP (GeneSNP Utah)TCEAL1
SNP : HGBaseTCEAL1
Genetic variants : HAPMAPTCEAL1
Somatic Mutations in Cancer : COSMICTCEAL1 
CONAN: Copy Number AnalysisTCEAL1 
Mutations and Diseases : HGMDTCEAL1
OMIM300237   
GENETests300237   
Disease Genetic AssociationTCEAL1
Huge Navigator TCEAL1 [HugePedia]  TCEAL1 [HugeCancerGEM]
Genomic VariantsTCEAL1  TCEAL1 [DGVbeta]
snp3D : Map Gene to Disease9338
General knowledge
Homologs : HomoloGeneTCEAL1
Homology/Alignments : Family Browser (UCSC)TCEAL1
Phylogenetic Trees/Animal Genes : TreeFamTCEAL1
Chemical/Protein Interactions : CTD9338
Chemical/Pharm GKB GenePA36375
Clinical trialTCEAL1
Cancer Resource (Charite)ENSG00000172465
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
PubGeneTCEAL1
iHOPTCEAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:48:13 CEST 2013
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