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TCEAL1 (transcription elongation factor A like 1)

Identity

Alias_namestranscription elongation factor A (SII)-like 1
Alias_symbol (synonym)p21
pp21
SIIR
P21
WEX9
Other alias
HGNC (Hugo) TCEAL1
LocusID (NCBI) 9338
Atlas_Id 46344
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103628964 and ends at 103630948 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TP53 (17p13.1) / TCEAL1 (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEAL1   11616
Cards
Entrez_Gene (NCBI)TCEAL1  9338  transcription elongation factor A like 1
AliasesSIIR; WEX9; p21; pp21
GeneCards (Weizmann)TCEAL1
Ensembl hg19 (Hinxton)ENSG00000172465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172465 [Gene_View]  chrX:103628964-103630948 [Contig_View]  TCEAL1 [Vega]
ICGC DataPortalENSG00000172465
TCGA cBioPortalTCEAL1
AceView (NCBI)TCEAL1
Genatlas (Paris)TCEAL1
WikiGenes9338
SOURCE (Princeton)TCEAL1
Genetics Home Reference (NIH)TCEAL1
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL1  -     chrX:103628964-103630948 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL1  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblTCEAL1 - Xq22.2 [CytoView hg19]  TCEAL1 - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBITCEAL1 [Mapview hg19]  TCEAL1 [Mapview hg38]
OMIM300237   
Gene and transcription
Genbank (Entrez)BC000809 BM784458 BU602495 BX092470 CB053221
RefSeq transcript (Entrez)NM_001006639 NM_001006640 NM_004780
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL1
Cluster EST : UnigeneHs.95243 [ NCBI ]
CGAP (NCI)Hs.95243
Alternative Splicing GalleryENSG00000172465
Gene ExpressionTCEAL1 [ NCBI-GEO ]   TCEAL1 [ EBI - ARRAY_EXPRESS ]   TCEAL1 [ SEEK ]   TCEAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9338
GTEX Portal (Tissue expression)TCEAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15170   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15170  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15170
Splice isoforms : SwissVarQ15170
PhosPhoSitePlusQ15170
Domains : Interpro (EBI)TCEAL1    TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL1
DMDM Disease mutations9338
Blocks (Seattle)TCEAL1
SuperfamilyQ15170
Human Protein AtlasENSG00000172465
Peptide AtlasQ15170
HPRD02211
IPIIPI00759507   IPI00477802   IPI01018642   
Protein Interaction databases
DIP (DOE-UCLA)Q15170
IntAct (EBI)Q15170
FunCoupENSG00000172465
BioGRIDTCEAL1
STRING (EMBL)TCEAL1
ZODIACTCEAL1
Ontologies - Pathways
QuickGOQ15170
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  transcription, DNA-templated  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  transcription, DNA-templated  
NDEx NetworkTCEAL1
Atlas of Cancer Signalling NetworkTCEAL1
Wikipedia pathwaysTCEAL1
Orthology - Evolution
OrthoDB9338
GeneTree (enSembl)ENSG00000172465
Phylogenetic Trees/Animal Genes : TreeFamTCEAL1
HOVERGENQ15170
HOGENOMQ15170
Homologs : HomoloGeneTCEAL1
Homology/Alignments : Family Browser (UCSC)TCEAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL1
dbVarTCEAL1
ClinVarTCEAL1
1000_GenomesTCEAL1 
Exome Variant ServerTCEAL1
ExAC (Exome Aggregation Consortium)TCEAL1 (select the gene name)
Genetic variants : HAPMAP9338
Genomic Variants (DGV)TCEAL1 [DGVbeta]
DECIPHERTCEAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL1 
Mutations
ICGC Data PortalTCEAL1 
TCGA Data PortalTCEAL1 
Broad Tumor PortalTCEAL1
OASIS PortalTCEAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEAL1
DgiDB (Drug Gene Interaction Database)TCEAL1
DoCM (Curated mutations)TCEAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL1 (select a term)
intoGenTCEAL1
Cancer3DTCEAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300237   
Orphanet
MedgenTCEAL1
Genetic Testing Registry TCEAL1
NextProtQ15170 [Medical]
TSGene9338
GENETestsTCEAL1
Target ValidationTCEAL1
Huge Navigator TCEAL1 [HugePedia]
snp3D : Map Gene to Disease9338
BioCentury BCIQTCEAL1
ClinGenTCEAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9338
Chemical/Pharm GKB GenePA36375
Clinical trialTCEAL1
Miscellaneous
canSAR (ICR)TCEAL1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL1
EVEXTCEAL1
GoPubMedTCEAL1
iHOPTCEAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:34:29 CEST 2017

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