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TCEAL1 (transcription elongation factor A like 1)

Identity

Alias (NCBI)SIIR
WEX9
p21
pp21
HGNC (Hugo) TCEAL1
HGNC Alias symbp21
pp21
SIIR
P21
WEX9
HGNC Previous nametranscription elongation factor A (SII)-like 1
LocusID (NCBI) 9338
Atlas_Id 46344
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103628975 and ends at 103630948 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TP53 (17p13.1) / TCEAL1 (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCEAL1   11616
Cards
Entrez_Gene (NCBI)TCEAL1    transcription elongation factor A like 1
AliasesSIIR; WEX9; p21; pp21
GeneCards (Weizmann)TCEAL1
Ensembl hg19 (Hinxton)ENSG00000172465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172465 [Gene_View]  ENSG00000172465 [Sequence]  chrX:103628975-103630948 [Contig_View]  TCEAL1 [Vega]
ICGC DataPortalENSG00000172465
TCGA cBioPortalTCEAL1
AceView (NCBI)TCEAL1
Genatlas (Paris)TCEAL1
SOURCE (Princeton)TCEAL1
Genetics Home Reference (NIH)TCEAL1
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL1  -     chrX:103628975-103630948 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL1  -     Xq22.2   [Description]    (hg19-Feb_2009)
GoldenPathTCEAL1 - Xq22.2 [CytoView hg19]  TCEAL1 - Xq22.2 [CytoView hg38]
ImmunoBaseENSG00000172465
Genome Data Viewer NCBITCEAL1 [Mapview hg19]  
OMIM300237   
Gene and transcription
Genbank (Entrez)BC000809 BM784458 BU602495 BX092470 CB053221
RefSeq transcript (Entrez)NM_001006639 NM_001006640 NM_004780
Consensus coding sequences : CCDS (NCBI)TCEAL1
Gene ExpressionTCEAL1 [ NCBI-GEO ]   TCEAL1 [ EBI - ARRAY_EXPRESS ]   TCEAL1 [ SEEK ]   TCEAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL1 [ Firebrowse - Broad ]
GenevisibleExpression of TCEAL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9338
GTEX Portal (Tissue expression)TCEAL1
Human Protein AtlasENSG00000172465-TCEAL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15170   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15170  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15170
PhosPhoSitePlusQ15170
Domains : Interpro (EBI)TCEAL1    TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL1
SuperfamilyQ15170
AlphaFold pdb e-kbQ15170   
Human Protein Atlas [tissue]ENSG00000172465-TCEAL1 [tissue]
HPRD02211
Protein Interaction databases
DIP (DOE-UCLA)Q15170
IntAct (EBI)Q15170
BioGRIDTCEAL1
STRING (EMBL)TCEAL1
ZODIACTCEAL1
Ontologies - Pathways
QuickGOQ15170
Ontology : AmiGOnucleus  nucleus  nucleoplasm  negative regulation of gene expression  WW domain binding  
Ontology : EGO-EBInucleus  nucleus  nucleoplasm  negative regulation of gene expression  WW domain binding  
NDEx NetworkTCEAL1
Atlas of Cancer Signalling NetworkTCEAL1
Wikipedia pathwaysTCEAL1
Orthology - Evolution
OrthoDB9338
GeneTree (enSembl)ENSG00000172465
Phylogenetic Trees/Animal Genes : TreeFamTCEAL1
Homologs : HomoloGeneTCEAL1
Homology/Alignments : Family Browser (UCSC)TCEAL1
Gene fusions - Rearrangements
Fusion : QuiverTCEAL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL1
dbVarTCEAL1
ClinVarTCEAL1
MonarchTCEAL1
1000_GenomesTCEAL1 
Exome Variant ServerTCEAL1
GNOMAD BrowserENSG00000172465
Varsome BrowserTCEAL1
ACMGTCEAL1 variants
VarityQ15170
Genomic Variants (DGV)TCEAL1 [DGVbeta]
DECIPHERTCEAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL1 
Mutations
ICGC Data PortalTCEAL1 
TCGA Data PortalTCEAL1 
Broad Tumor PortalTCEAL1
OASIS PortalTCEAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCEAL1
Mutations and Diseases : HGMDTCEAL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCEAL1
DgiDB (Drug Gene Interaction Database)TCEAL1
DoCM (Curated mutations)TCEAL1
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL1
Cancer3DTCEAL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300237   
Orphanet
DisGeNETTCEAL1
MedgenTCEAL1
Genetic Testing Registry TCEAL1
NextProtQ15170 [Medical]
GENETestsTCEAL1
Target ValidationTCEAL1
Huge Navigator TCEAL1 [HugePedia]
ClinGenTCEAL1
Clinical trials, drugs, therapy
MyCancerGenomeTCEAL1
Protein Interactions : CTDTCEAL1
Pharm GKB GenePA36375
PharosQ15170
Clinical trialTCEAL1
Miscellaneous
canSAR (ICR)TCEAL1
HarmonizomeTCEAL1
DataMed IndexTCEAL1
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCEAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:34:33 CEST 2021

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