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TCEAL2 (transcription elongation factor A like 2)

Identity

Alias_namestranscription elongation factor A (SII)-like 2
Alias_symbol (synonym)my048
MY0876G05
WEX1
Other alias
HGNC (Hugo) TCEAL2
LocusID (NCBI) 140597
Atlas_Id 74564
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102125688 and ends at 102127712 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TCEAL2 (Xq22.1) / DLG2 (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEAL2   29818
Cards
Entrez_Gene (NCBI)TCEAL2  140597  transcription elongation factor A like 2
AliasesMY0876G05; WEX1; my048
GeneCards (Weizmann)TCEAL2
Ensembl hg19 (Hinxton)ENSG00000184905 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184905 [Gene_View]  chrX:102125688-102127712 [Contig_View]  TCEAL2 [Vega]
ICGC DataPortalENSG00000184905
TCGA cBioPortalTCEAL2
AceView (NCBI)TCEAL2
Genatlas (Paris)TCEAL2
WikiGenes140597
SOURCE (Princeton)TCEAL2
Genetics Home Reference (NIH)TCEAL2
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL2  -     chrX:102125688-102127712 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL2  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblTCEAL2 - Xq22.1 [CytoView hg19]  TCEAL2 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBITCEAL2 [Mapview hg19]  TCEAL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF325115 AK312138 BC093932 BC104764 BM699243
RefSeq transcript (Entrez)NM_080390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL2
Cluster EST : UnigeneHs.401835 [ NCBI ]
CGAP (NCI)Hs.401835
Alternative Splicing GalleryENSG00000184905
Gene ExpressionTCEAL2 [ NCBI-GEO ]   TCEAL2 [ EBI - ARRAY_EXPRESS ]   TCEAL2 [ SEEK ]   TCEAL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140597
GTEX Portal (Tissue expression)TCEAL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3H9
Splice isoforms : SwissVarQ9H3H9
PhosPhoSitePlusQ9H3H9
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL2
DMDM Disease mutations140597
Blocks (Seattle)TCEAL2
SuperfamilyQ9H3H9
Human Protein AtlasENSG00000184905
Peptide AtlasQ9H3H9
HPRD06761
IPIIPI00002013   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3H9
IntAct (EBI)Q9H3H9
FunCoupENSG00000184905
BioGRIDTCEAL2
STRING (EMBL)TCEAL2
ZODIACTCEAL2
Ontologies - Pathways
QuickGOQ9H3H9
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTCEAL2
Atlas of Cancer Signalling NetworkTCEAL2
Wikipedia pathwaysTCEAL2
Orthology - Evolution
OrthoDB140597
GeneTree (enSembl)ENSG00000184905
Phylogenetic Trees/Animal Genes : TreeFamTCEAL2
HOVERGENQ9H3H9
HOGENOMQ9H3H9
Homologs : HomoloGeneTCEAL2
Homology/Alignments : Family Browser (UCSC)TCEAL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL2
dbVarTCEAL2
ClinVarTCEAL2
1000_GenomesTCEAL2 
Exome Variant ServerTCEAL2
ExAC (Exome Aggregation Consortium)TCEAL2 (select the gene name)
Genetic variants : HAPMAP140597
Genomic Variants (DGV)TCEAL2 [DGVbeta]
DECIPHERTCEAL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL2 
Mutations
ICGC Data PortalTCEAL2 
TCGA Data PortalTCEAL2 
Broad Tumor PortalTCEAL2
OASIS PortalTCEAL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEAL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TCEAL2
DgiDB (Drug Gene Interaction Database)TCEAL2
DoCM (Curated mutations)TCEAL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL2 (select a term)
intoGenTCEAL2
Cancer3DTCEAL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEAL2
Genetic Testing Registry TCEAL2
NextProtQ9H3H9 [Medical]
TSGene140597
GENETestsTCEAL2
Target ValidationTCEAL2
Huge Navigator TCEAL2 [HugePedia]
snp3D : Map Gene to Disease140597
BioCentury BCIQTCEAL2
ClinGenTCEAL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140597
Chemical/Pharm GKB GenePA134922072
Clinical trialTCEAL2
Miscellaneous
canSAR (ICR)TCEAL2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL2
EVEXTCEAL2
GoPubMedTCEAL2
iHOPTCEAL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:06 CEST 2017

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