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TCEAL3 (transcription elongation factor A like 3)

Identity

Alias_namestranscription elongation factor A (SII)-like 3
Alias_symbol (synonym)MGC15737
WEX8
Other alias
HGNC (Hugo) TCEAL3
LocusID (NCBI) 85012
Atlas_Id 74565
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103607906 and ends at 103609927 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TCEAL3 (Xq22.2) / TMEM179B (11q12.3)TMEM179B (11q12.3) / TCEAL3 (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEAL3   28247
Cards
Entrez_Gene (NCBI)TCEAL3  85012  transcription elongation factor A like 3
AliasesWEX8
GeneCards (Weizmann)TCEAL3
Ensembl hg19 (Hinxton)ENSG00000196507 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196507 [Gene_View]  chrX:103607906-103609927 [Contig_View]  TCEAL3 [Vega]
ICGC DataPortalENSG00000196507
TCGA cBioPortalTCEAL3
AceView (NCBI)TCEAL3
Genatlas (Paris)TCEAL3
WikiGenes85012
SOURCE (Princeton)TCEAL3
Genetics Home Reference (NIH)TCEAL3
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL3  -     chrX:103607906-103609927 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL3  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblTCEAL3 - Xq22.2 [CytoView hg19]  TCEAL3 - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBITCEAL3 [Mapview hg19]  TCEAL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF163263 AK098494 BC007622 BC008703 EU446607
RefSeq transcript (Entrez)NM_001006933 NM_032926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL3
Cluster EST : UnigeneHs.311776 [ NCBI ]
CGAP (NCI)Hs.311776
Alternative Splicing GalleryENSG00000196507
Gene ExpressionTCEAL3 [ NCBI-GEO ]   TCEAL3 [ EBI - ARRAY_EXPRESS ]   TCEAL3 [ SEEK ]   TCEAL3 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85012
GTEX Portal (Tissue expression)TCEAL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969E4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969E4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969E4
Splice isoforms : SwissVarQ969E4
PhosPhoSitePlusQ969E4
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL3
DMDM Disease mutations85012
Blocks (Seattle)TCEAL3
SuperfamilyQ969E4
Human Protein AtlasENSG00000196507
Peptide AtlasQ969E4
HPRD06636
IPIIPI00478127   
Protein Interaction databases
DIP (DOE-UCLA)Q969E4
IntAct (EBI)Q969E4
FunCoupENSG00000196507
BioGRIDTCEAL3
STRING (EMBL)TCEAL3
ZODIACTCEAL3
Ontologies - Pathways
QuickGOQ969E4
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTCEAL3
Atlas of Cancer Signalling NetworkTCEAL3
Wikipedia pathwaysTCEAL3
Orthology - Evolution
OrthoDB85012
GeneTree (enSembl)ENSG00000196507
Phylogenetic Trees/Animal Genes : TreeFamTCEAL3
HOVERGENQ969E4
HOGENOMQ969E4
Homologs : HomoloGeneTCEAL3
Homology/Alignments : Family Browser (UCSC)TCEAL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL3
dbVarTCEAL3
ClinVarTCEAL3
1000_GenomesTCEAL3 
Exome Variant ServerTCEAL3
ExAC (Exome Aggregation Consortium)TCEAL3 (select the gene name)
Genetic variants : HAPMAP85012
Genomic Variants (DGV)TCEAL3 [DGVbeta]
DECIPHERTCEAL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL3 
Mutations
ICGC Data PortalTCEAL3 
TCGA Data PortalTCEAL3 
Broad Tumor PortalTCEAL3
OASIS PortalTCEAL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEAL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEAL3
DgiDB (Drug Gene Interaction Database)TCEAL3
DoCM (Curated mutations)TCEAL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL3 (select a term)
intoGenTCEAL3
Cancer3DTCEAL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEAL3
Genetic Testing Registry TCEAL3
NextProtQ969E4 [Medical]
TSGene85012
GENETestsTCEAL3
Target ValidationTCEAL3
Huge Navigator TCEAL3 [HugePedia]
snp3D : Map Gene to Disease85012
BioCentury BCIQTCEAL3
ClinGenTCEAL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85012
Chemical/Pharm GKB GenePA128394737
Clinical trialTCEAL3
Miscellaneous
canSAR (ICR)TCEAL3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL3
EVEXTCEAL3
GoPubMedTCEAL3
iHOPTCEAL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:06 CEST 2017

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