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TCEAL4 (transcription elongation factor A like 4)

Identity

Alias_namestranscription elongation factor A (SII)-like 4
Alias_symbol (synonym)FLJ21174
WEX7
Other aliasNPD017
HGNC (Hugo) TCEAL4
LocusID (NCBI) 79921
Atlas_Id 45719
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103585485 and ends at 103587736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EFHC1 (6p12.2) / TCEAL4 (Xq22.2)LOC100507412 (-) / TCEAL4 (Xq22.2)MCM7 (7q22.1) / TCEAL4 (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEAL4   26121
Cards
Entrez_Gene (NCBI)TCEAL4  79921  transcription elongation factor A like 4
AliasesNPD017; WEX7
GeneCards (Weizmann)TCEAL4
Ensembl hg19 (Hinxton)ENSG00000133142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133142 [Gene_View]  chrX:103585485-103587736 [Contig_View]  TCEAL4 [Vega]
ICGC DataPortalENSG00000133142
TCGA cBioPortalTCEAL4
AceView (NCBI)TCEAL4
Genatlas (Paris)TCEAL4
WikiGenes79921
SOURCE (Princeton)TCEAL4
Genetics Home Reference (NIH)TCEAL4
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL4  -     chrX:103585485-103587736 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL4  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblTCEAL4 - Xq22.2 [CytoView hg19]  TCEAL4 - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBITCEAL4 [Mapview hg19]  TCEAL4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF271783 AF314542 AI879651 AK024827 AK093021
RefSeq transcript (Entrez)NM_001006935 NM_001006936 NM_001006937 NM_001300901 NM_001305840 NM_001305841 NM_001305842 NM_024863
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL4
Cluster EST : UnigeneHs.194329 [ NCBI ]
CGAP (NCI)Hs.194329
Alternative Splicing GalleryENSG00000133142
Gene ExpressionTCEAL4 [ NCBI-GEO ]   TCEAL4 [ EBI - ARRAY_EXPRESS ]   TCEAL4 [ SEEK ]   TCEAL4 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79921
GTEX Portal (Tissue expression)TCEAL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EI5
Splice isoforms : SwissVarQ96EI5
PhosPhoSitePlusQ96EI5
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL4
DMDM Disease mutations79921
Blocks (Seattle)TCEAL4
SuperfamilyQ96EI5
Human Protein AtlasENSG00000133142
Peptide AtlasQ96EI5
HPRD06537
IPIIPI00657999   IPI00647163   IPI00829838   IPI00965575   IPI00966421   IPI00966963   IPI00967995   
Protein Interaction databases
DIP (DOE-UCLA)Q96EI5
IntAct (EBI)Q96EI5
FunCoupENSG00000133142
BioGRIDTCEAL4
STRING (EMBL)TCEAL4
ZODIACTCEAL4
Ontologies - Pathways
QuickGOQ96EI5
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTCEAL4
Atlas of Cancer Signalling NetworkTCEAL4
Wikipedia pathwaysTCEAL4
Orthology - Evolution
OrthoDB79921
GeneTree (enSembl)ENSG00000133142
Phylogenetic Trees/Animal Genes : TreeFamTCEAL4
HOVERGENQ96EI5
HOGENOMQ96EI5
Homologs : HomoloGeneTCEAL4
Homology/Alignments : Family Browser (UCSC)TCEAL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL4
dbVarTCEAL4
ClinVarTCEAL4
1000_GenomesTCEAL4 
Exome Variant ServerTCEAL4
ExAC (Exome Aggregation Consortium)TCEAL4 (select the gene name)
Genetic variants : HAPMAP79921
Genomic Variants (DGV)TCEAL4 [DGVbeta]
DECIPHERTCEAL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL4 
Mutations
ICGC Data PortalTCEAL4 
TCGA Data PortalTCEAL4 
Broad Tumor PortalTCEAL4
OASIS PortalTCEAL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEAL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TCEAL4
DgiDB (Drug Gene Interaction Database)TCEAL4
DoCM (Curated mutations)TCEAL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL4 (select a term)
intoGenTCEAL4
Cancer3DTCEAL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEAL4
Genetic Testing Registry TCEAL4
NextProtQ96EI5 [Medical]
TSGene79921
GENETestsTCEAL4
Target ValidationTCEAL4
Huge Navigator TCEAL4 [HugePedia]
snp3D : Map Gene to Disease79921
BioCentury BCIQTCEAL4
ClinGenTCEAL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79921
Chemical/Pharm GKB GenePA128394724
Clinical trialTCEAL4
Miscellaneous
canSAR (ICR)TCEAL4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL4
EVEXTCEAL4
GoPubMedTCEAL4
iHOPTCEAL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:58:51 CEST 2017

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