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TCEAL5 (transcription elongation factor A like 5)

Identity

Alias_namestranscription elongation factor A (SII)-like 5
Alias_symbol (synonym)WEX4
Other alias
HGNC (Hugo) TCEAL5
LocusID (NCBI) 340543
Atlas_Id 74566
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 103273690 and ends at 103276869 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

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Nomenclature
HGNC (Hugo)TCEAL5   22282
Cards
Entrez_Gene (NCBI)TCEAL5  340543  transcription elongation factor A like 5
AliasesWEX4
GeneCards (Weizmann)TCEAL5
Ensembl hg19 (Hinxton)ENSG00000204065 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204065 [Gene_View]  chrX:103273690-103276869 [Contig_View]  TCEAL5 [Vega]
ICGC DataPortalENSG00000204065
TCGA cBioPortalTCEAL5
AceView (NCBI)TCEAL5
Genatlas (Paris)TCEAL5
WikiGenes340543
SOURCE (Princeton)TCEAL5
Genetics Home Reference (NIH)TCEAL5
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL5  -     chrX:103273690-103276869 -  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL5  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblTCEAL5 - Xq22.1 [CytoView hg19]  TCEAL5 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBITCEAL5 [Mapview hg19]  TCEAL5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086094 BC132922 BC132924 BM725918
RefSeq transcript (Entrez)NM_001012979
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL5
Cluster EST : UnigeneHs.403462 [ NCBI ]
CGAP (NCI)Hs.403462
Alternative Splicing GalleryENSG00000204065
Gene ExpressionTCEAL5 [ NCBI-GEO ]   TCEAL5 [ EBI - ARRAY_EXPRESS ]   TCEAL5 [ SEEK ]   TCEAL5 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340543
GTEX Portal (Tissue expression)TCEAL5
Human Protein AtlasENSG00000204065-TCEAL5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9L2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9L2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9L2
Splice isoforms : SwissVarQ5H9L2
PhosPhoSitePlusQ5H9L2
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL5
DMDM Disease mutations340543
Blocks (Seattle)TCEAL5
SuperfamilyQ5H9L2
Human Protein Atlas [tissue]ENSG00000204065-TCEAL5 [tissue]
Peptide AtlasQ5H9L2
HPRD18502
IPIIPI00257932   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9L2
IntAct (EBI)Q5H9L2
FunCoupENSG00000204065
BioGRIDTCEAL5
STRING (EMBL)TCEAL5
ZODIACTCEAL5
Ontologies - Pathways
QuickGOQ5H9L2
Ontology : AmiGOprotein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTCEAL5
Atlas of Cancer Signalling NetworkTCEAL5
Wikipedia pathwaysTCEAL5
Orthology - Evolution
OrthoDB340543
GeneTree (enSembl)ENSG00000204065
Phylogenetic Trees/Animal Genes : TreeFamTCEAL5
HOVERGENQ5H9L2
HOGENOMQ5H9L2
Homologs : HomoloGeneTCEAL5
Homology/Alignments : Family Browser (UCSC)TCEAL5
Gene fusions - Rearrangements
Tumor Fusion PortalTCEAL5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL5
dbVarTCEAL5
ClinVarTCEAL5
1000_GenomesTCEAL5 
Exome Variant ServerTCEAL5
ExAC (Exome Aggregation Consortium)ENSG00000204065
GNOMAD BrowserENSG00000204065
Genetic variants : HAPMAP340543
Genomic Variants (DGV)TCEAL5 [DGVbeta]
DECIPHERTCEAL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL5 
Mutations
ICGC Data PortalTCEAL5 
TCGA Data PortalTCEAL5 
Broad Tumor PortalTCEAL5
OASIS PortalTCEAL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEAL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TCEAL5
DgiDB (Drug Gene Interaction Database)TCEAL5
DoCM (Curated mutations)TCEAL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL5 (select a term)
intoGenTCEAL5
Cancer3DTCEAL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCEAL5
MedgenTCEAL5
Genetic Testing Registry TCEAL5
NextProtQ5H9L2 [Medical]
TSGene340543
GENETestsTCEAL5
Target ValidationTCEAL5
Huge Navigator TCEAL5 [HugePedia]
snp3D : Map Gene to Disease340543
BioCentury BCIQTCEAL5
ClinGenTCEAL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340543
Chemical/Pharm GKB GenePA134950668
Clinical trialTCEAL5
Miscellaneous
canSAR (ICR)TCEAL5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL5
EVEXTCEAL5
GoPubMedTCEAL5
iHOPTCEAL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:45 CET 2017

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