Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCEAL6 (transcription elongation factor A like 6)

Identity

Alias (NCBI)Tceal3
WEX2
HGNC (Hugo) TCEAL6
HGNC Alias symbWEX2
HGNC Previous nametranscription elongation factor A (SII)-like 6
LocusID (NCBI) 158931
Atlas_Id 74567
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102138502 and ends at 102142481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCEAL6   24553
Cards
Entrez_Gene (NCBI)TCEAL6    transcription elongation factor A like 6
AliasesTceal3; WEX2
GeneCards (Weizmann)TCEAL6
Ensembl hg19 (Hinxton)ENSG00000204071 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204071 [Gene_View]  ENSG00000204071 [Sequence]  chrX:102138502-102142481 [Contig_View]  TCEAL6 [Vega]
ICGC DataPortalENSG00000204071
TCGA cBioPortalTCEAL6
AceView (NCBI)TCEAL6
Genatlas (Paris)TCEAL6
SOURCE (Princeton)TCEAL6
Genetics Home Reference (NIH)TCEAL6
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL6  -     chrX:102138502-102142481 -  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL6  -     Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPathTCEAL6 - Xq22.1 [CytoView hg19]  TCEAL6 - Xq22.1 [CytoView hg38]
ImmunoBaseENSG00000204071
Genome Data Viewer NCBITCEAL6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC071675 BU728548 CK003127 DB310541 DN993514
RefSeq transcript (Entrez)NM_001006938 NM_001367790
Consensus coding sequences : CCDS (NCBI)TCEAL6
Gene ExpressionTCEAL6 [ NCBI-GEO ]   TCEAL6 [ EBI - ARRAY_EXPRESS ]   TCEAL6 [ SEEK ]   TCEAL6 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL6 [ Firebrowse - Broad ]
GenevisibleExpression of TCEAL6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158931
GTEX Portal (Tissue expression)TCEAL6
Human Protein AtlasENSG00000204071-TCEAL6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPX3
PhosPhoSitePlusQ6IPX3
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL6
SuperfamilyQ6IPX3
AlphaFold pdb e-kbQ6IPX3   
Human Protein Atlas [tissue]ENSG00000204071-TCEAL6 [tissue]
HPRD17311
Protein Interaction databases
DIP (DOE-UCLA)Q6IPX3
IntAct (EBI)Q6IPX3
BioGRIDTCEAL6
STRING (EMBL)TCEAL6
ZODIACTCEAL6
Ontologies - Pathways
QuickGOQ6IPX3
Ontology : AmiGOnucleus  WW domain binding  
Ontology : EGO-EBInucleus  WW domain binding  
NDEx NetworkTCEAL6
Atlas of Cancer Signalling NetworkTCEAL6
Wikipedia pathwaysTCEAL6
Orthology - Evolution
OrthoDB158931
GeneTree (enSembl)ENSG00000204071
Phylogenetic Trees/Animal Genes : TreeFamTCEAL6
Homologs : HomoloGeneTCEAL6
Homology/Alignments : Family Browser (UCSC)TCEAL6
Gene fusions - Rearrangements
Fusion : QuiverTCEAL6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL6
dbVarTCEAL6
ClinVarTCEAL6
MonarchTCEAL6
1000_GenomesTCEAL6 
Exome Variant ServerTCEAL6
GNOMAD BrowserENSG00000204071
Varsome BrowserTCEAL6
ACMGTCEAL6 variants
VarityQ6IPX3
Genomic Variants (DGV)TCEAL6 [DGVbeta]
DECIPHERTCEAL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL6 
Mutations
ICGC Data PortalTCEAL6 
TCGA Data PortalTCEAL6 
Broad Tumor PortalTCEAL6
OASIS PortalTCEAL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCEAL6
Mutations and Diseases : HGMDTCEAL6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCEAL6
DgiDB (Drug Gene Interaction Database)TCEAL6
DoCM (Curated mutations)TCEAL6
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL6
Cancer3DTCEAL6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCEAL6
MedgenTCEAL6
Genetic Testing Registry TCEAL6
NextProtQ6IPX3 [Medical]
GENETestsTCEAL6
Target ValidationTCEAL6
Huge Navigator TCEAL6 [HugePedia]
ClinGenTCEAL6
Clinical trials, drugs, therapy
MyCancerGenomeTCEAL6
Protein Interactions : CTDTCEAL6
Pharm GKB GenePA142670828
PharosQ6IPX3
Clinical trialTCEAL6
Miscellaneous
canSAR (ICR)TCEAL6
HarmonizomeTCEAL6
DataMed IndexTCEAL6
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCEAL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:03 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.