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TCEAL6 (transcription elongation factor A like 6)

Identity

Alias_namestranscription elongation factor A (SII)-like 6
Alias_symbol (synonym)WEX2
Other aliasTceal3
HGNC (Hugo) TCEAL6
LocusID (NCBI) 158931
Atlas_Id 74567
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102139961 and ends at 102142416 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEAL6   24553
Cards
Entrez_Gene (NCBI)TCEAL6  158931  transcription elongation factor A like 6
AliasesTceal3; WEX2
GeneCards (Weizmann)TCEAL6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:102139961-102142416 [Contig_View]  TCEAL6 [Vega]
TCGA cBioPortalTCEAL6
AceView (NCBI)TCEAL6
Genatlas (Paris)TCEAL6
WikiGenes158931
SOURCE (Princeton)TCEAL6
Genetics Home Reference (NIH)TCEAL6
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL6  -     chrX:102139961-102142416 -  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL6  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblTCEAL6 - Xq22.1 [CytoView hg19]  TCEAL6 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBITCEAL6 [Mapview hg19]  TCEAL6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC071675 DN993514
RefSeq transcript (Entrez)NM_001006938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL6
Cluster EST : UnigeneHs.447815 [ NCBI ]
CGAP (NCI)Hs.447815
Gene ExpressionTCEAL6 [ NCBI-GEO ]   TCEAL6 [ EBI - ARRAY_EXPRESS ]   TCEAL6 [ SEEK ]   TCEAL6 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158931
GTEX Portal (Tissue expression)TCEAL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPX3
Splice isoforms : SwissVarQ6IPX3
PhosPhoSitePlusQ6IPX3
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL6
DMDM Disease mutations158931
Blocks (Seattle)TCEAL6
SuperfamilyQ6IPX3
Peptide AtlasQ6IPX3
HPRD17311
IPIIPI00056312   IPI00759607   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPX3
IntAct (EBI)Q6IPX3
BioGRIDTCEAL6
STRING (EMBL)TCEAL6
ZODIACTCEAL6
Ontologies - Pathways
QuickGOQ6IPX3
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTCEAL6
Atlas of Cancer Signalling NetworkTCEAL6
Wikipedia pathwaysTCEAL6
Orthology - Evolution
OrthoDB158931
Phylogenetic Trees/Animal Genes : TreeFamTCEAL6
HOVERGENQ6IPX3
HOGENOMQ6IPX3
Homologs : HomoloGeneTCEAL6
Homology/Alignments : Family Browser (UCSC)TCEAL6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL6
dbVarTCEAL6
ClinVarTCEAL6
1000_GenomesTCEAL6 
Exome Variant ServerTCEAL6
ExAC (Exome Aggregation Consortium)TCEAL6 (select the gene name)
Genetic variants : HAPMAP158931
Genomic Variants (DGV)TCEAL6 [DGVbeta]
DECIPHERTCEAL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL6 
Mutations
ICGC Data PortalTCEAL6 
TCGA Data PortalTCEAL6 
Broad Tumor PortalTCEAL6
OASIS PortalTCEAL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEAL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEAL6
DgiDB (Drug Gene Interaction Database)TCEAL6
DoCM (Curated mutations)TCEAL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL6 (select a term)
intoGenTCEAL6
Cancer3DTCEAL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEAL6
Genetic Testing Registry TCEAL6
NextProtQ6IPX3 [Medical]
TSGene158931
GENETestsTCEAL6
Target ValidationTCEAL6
Huge Navigator TCEAL6 [HugePedia]
snp3D : Map Gene to Disease158931
BioCentury BCIQTCEAL6
ClinGenTCEAL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158931
Chemical/Pharm GKB GenePA142670828
Clinical trialTCEAL6
Miscellaneous
canSAR (ICR)TCEAL6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL6
EVEXTCEAL6
GoPubMedTCEAL6
iHOPTCEAL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:04 CEST 2017

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