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TCEAL8 (transcription elongation factor A like 8)

Identity

Alias_namestranscription elongation factor A (SII)-like 8
Alias_symbol (synonym)MGC45400
WEX3
Other alias
HGNC (Hugo) TCEAL8
LocusID (NCBI) 90843
Atlas_Id 74568
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 103252995 and ends at 103255193 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEAL8   28683
Cards
Entrez_Gene (NCBI)TCEAL8  90843  transcription elongation factor A like 8
AliasesWEX3
GeneCards (Weizmann)TCEAL8
Ensembl hg19 (Hinxton)ENSG00000180964 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180964 [Gene_View]  chrX:103252995-103255193 [Contig_View]  TCEAL8 [Vega]
ICGC DataPortalENSG00000180964
TCGA cBioPortalTCEAL8
AceView (NCBI)TCEAL8
Genatlas (Paris)TCEAL8
WikiGenes90843
SOURCE (Princeton)TCEAL8
Genetics Home Reference (NIH)TCEAL8
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL8  -     chrX:103252995-103255193 -  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL8  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblTCEAL8 - Xq22.1 [CytoView hg19]  TCEAL8 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBITCEAL8 [Mapview hg19]  TCEAL8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026349 AL833632 BC035573 BU932815 EU446605
RefSeq transcript (Entrez)NM_001006684 NM_153333
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL8
Cluster EST : UnigeneHs.389734 [ NCBI ]
CGAP (NCI)Hs.389734
Alternative Splicing GalleryENSG00000180964
Gene ExpressionTCEAL8 [ NCBI-GEO ]   TCEAL8 [ EBI - ARRAY_EXPRESS ]   TCEAL8 [ SEEK ]   TCEAL8 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90843
GTEX Portal (Tissue expression)TCEAL8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYN2
Splice isoforms : SwissVarQ8IYN2
PhosPhoSitePlusQ8IYN2
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL8
DMDM Disease mutations90843
Blocks (Seattle)TCEAL8
SuperfamilyQ8IYN2
Human Protein AtlasENSG00000180964
Peptide AtlasQ8IYN2
HPRD06656
IPIIPI00217810   IPI00640443   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYN2
IntAct (EBI)Q8IYN2
FunCoupENSG00000180964
BioGRIDTCEAL8
STRING (EMBL)TCEAL8
ZODIACTCEAL8
Ontologies - Pathways
QuickGOQ8IYN2
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkTCEAL8
Atlas of Cancer Signalling NetworkTCEAL8
Wikipedia pathwaysTCEAL8
Orthology - Evolution
OrthoDB90843
GeneTree (enSembl)ENSG00000180964
Phylogenetic Trees/Animal Genes : TreeFamTCEAL8
HOVERGENQ8IYN2
HOGENOMQ8IYN2
Homologs : HomoloGeneTCEAL8
Homology/Alignments : Family Browser (UCSC)TCEAL8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL8
dbVarTCEAL8
ClinVarTCEAL8
1000_GenomesTCEAL8 
Exome Variant ServerTCEAL8
ExAC (Exome Aggregation Consortium)TCEAL8 (select the gene name)
Genetic variants : HAPMAP90843
Genomic Variants (DGV)TCEAL8 [DGVbeta]
DECIPHERTCEAL8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL8 
Mutations
ICGC Data PortalTCEAL8 
TCGA Data PortalTCEAL8 
Broad Tumor PortalTCEAL8
OASIS PortalTCEAL8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEAL8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEAL8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TCEAL8
DgiDB (Drug Gene Interaction Database)TCEAL8
DoCM (Curated mutations)TCEAL8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL8 (select a term)
intoGenTCEAL8
Cancer3DTCEAL8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEAL8
Genetic Testing Registry TCEAL8
NextProtQ8IYN2 [Medical]
TSGene90843
GENETestsTCEAL8
Target ValidationTCEAL8
Huge Navigator TCEAL8 [HugePedia]
snp3D : Map Gene to Disease90843
BioCentury BCIQTCEAL8
ClinGenTCEAL8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90843
Chemical/Pharm GKB GenePA134991274
Clinical trialTCEAL8
Miscellaneous
canSAR (ICR)TCEAL8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL8
EVEXTCEAL8
GoPubMedTCEAL8
iHOPTCEAL8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:07 CEST 2017

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