Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCEAL9 (transcription elongation factor A like 9)

Identity

Alias_namesWBP5
WW domain binding protein 5
Alias_symbol (synonym)DKFZp313K1940
WEX6
Other alias
HGNC (Hugo) TCEAL9
LocusID (NCBI) 51186
Atlas_Id 78219
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103356452 and ends at 103358469 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEAL9   30084
Cards
Entrez_Gene (NCBI)TCEAL9  51186  transcription elongation factor A like 9
AliasesWBP5; WEX6
GeneCards (Weizmann)TCEAL9
Ensembl hg19 (Hinxton)ENSG00000185222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185222 [Gene_View]  chrX:103356452-103358469 [Contig_View]  TCEAL9 [Vega]
ICGC DataPortalENSG00000185222
TCGA cBioPortalTCEAL9
AceView (NCBI)TCEAL9
Genatlas (Paris)TCEAL9
WikiGenes51186
SOURCE (Princeton)TCEAL9
Genetics Home Reference (NIH)TCEAL9
Genomic and cartography
GoldenPath hg38 (UCSC)TCEAL9  -     chrX:103356452-103358469 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEAL9  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblTCEAL9 - Xq22.2 [CytoView hg19]  TCEAL9 - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBITCEAL9 [Mapview hg19]  TCEAL9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF125535 AK312190 AL833152 BC023544 BG400091
RefSeq transcript (Entrez)NM_001006612 NM_001006613 NM_001006614 NM_016303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEAL9
Cluster EST : UnigeneHs.533287 [ NCBI ]
CGAP (NCI)Hs.533287
Alternative Splicing GalleryENSG00000185222
Gene ExpressionTCEAL9 [ NCBI-GEO ]   TCEAL9 [ EBI - ARRAY_EXPRESS ]   TCEAL9 [ SEEK ]   TCEAL9 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEAL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51186
GTEX Portal (Tissue expression)TCEAL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHQ7
Splice isoforms : SwissVarQ9UHQ7
PhosPhoSitePlusQ9UHQ7
Domains : Interpro (EBI)TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)TCEAL9
DMDM Disease mutations51186
Blocks (Seattle)TCEAL9
SuperfamilyQ9UHQ7
Human Protein AtlasENSG00000185222
Peptide AtlasQ9UHQ7
HPRD06621
IPIIPI00008434   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHQ7
IntAct (EBI)Q9UHQ7
FunCoupENSG00000185222
BioGRIDTCEAL9
STRING (EMBL)TCEAL9
ZODIACTCEAL9
Ontologies - Pathways
QuickGOQ9UHQ7
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  WW domain binding  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  WW domain binding  
NDEx NetworkTCEAL9
Atlas of Cancer Signalling NetworkTCEAL9
Wikipedia pathwaysTCEAL9
Orthology - Evolution
OrthoDB51186
GeneTree (enSembl)ENSG00000185222
Phylogenetic Trees/Animal Genes : TreeFamTCEAL9
HOVERGENQ9UHQ7
HOGENOMQ9UHQ7
Homologs : HomoloGeneTCEAL9
Homology/Alignments : Family Browser (UCSC)TCEAL9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEAL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEAL9
dbVarTCEAL9
ClinVarTCEAL9
1000_GenomesTCEAL9 
Exome Variant ServerTCEAL9
ExAC (Exome Aggregation Consortium)TCEAL9 (select the gene name)
Genetic variants : HAPMAP51186
Genomic Variants (DGV)TCEAL9 [DGVbeta]
DECIPHERTCEAL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEAL9 
Mutations
ICGC Data PortalTCEAL9 
TCGA Data PortalTCEAL9 
Broad Tumor PortalTCEAL9
OASIS PortalTCEAL9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTCEAL9
BioMutasearch TCEAL9
DgiDB (Drug Gene Interaction Database)TCEAL9
DoCM (Curated mutations)TCEAL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEAL9 (select a term)
intoGenTCEAL9
Cancer3DTCEAL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEAL9
Genetic Testing Registry TCEAL9
NextProtQ9UHQ7 [Medical]
TSGene51186
GENETestsTCEAL9
Target ValidationTCEAL9
Huge Navigator TCEAL9 [HugePedia]
snp3D : Map Gene to Disease51186
BioCentury BCIQTCEAL9
ClinGenTCEAL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51186
Chemical/Pharm GKB GenePA134921975
Clinical trialTCEAL9
Miscellaneous
canSAR (ICR)TCEAL9 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEAL9
EVEXTCEAL9
GoPubMedTCEAL9
iHOPTCEAL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:04 CEST 2017

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