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TCEANC (transcription elongation factor A N-terminal and central domain containing)

Identity

Alias (NCBI)-
HGNC (Hugo) TCEANC
HGNC Alias symbMGC17403
HGNC Previous nametranscription elongation factor A (SII) N-terminal and central domain containing
LocusID (NCBI) 170082
Atlas_Id 74569
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 13653191 and ends at 13665408 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TCEANC (Xp22.2) / EVPL (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TCEANC   28277
Cards
Entrez_Gene (NCBI)TCEANC    transcription elongation factor A N-terminal and central domain containing
Aliases
GeneCards (Weizmann)TCEANC
Ensembl hg19 (Hinxton)ENSG00000176896 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176896 [Gene_View]  ENSG00000176896 [Sequence]  chrX:13653191-13665408 [Contig_View]  TCEANC [Vega]
ICGC DataPortalENSG00000176896
TCGA cBioPortalTCEANC
AceView (NCBI)TCEANC
Genatlas (Paris)TCEANC
SOURCE (Princeton)TCEANC
Genetics Home Reference (NIH)TCEANC
Genomic and cartography
GoldenPath hg38 (UCSC)TCEANC  -     chrX:13653191-13665408 +  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEANC  -     Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPathTCEANC - Xp22.2 [CytoView hg19]  TCEANC - Xp22.2 [CytoView hg38]
ImmunoBaseENSG00000176896
genome Data Viewer NCBITCEANC [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK097032 AK291271 AK294465 AK315599 BC020095
RefSeq transcript (Entrez)NM_001297563 NM_001297564 NM_152634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEANC
Alternative Splicing GalleryENSG00000176896
Gene ExpressionTCEANC [ NCBI-GEO ]   TCEANC [ EBI - ARRAY_EXPRESS ]   TCEANC [ SEEK ]   TCEANC [ MEM ]
Gene Expression Viewer (FireBrowse)TCEANC [ Firebrowse - Broad ]
GenevisibleExpression of TCEANC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170082
GTEX Portal (Tissue expression)TCEANC
Human Protein AtlasENSG00000176896-TCEANC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8B7
Splice isoforms : SwissVarQ8N8B7
PhosPhoSitePlusQ8N8B7
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)   
Domains : Interpro (EBI)TF_IIS-typ    TFIIS/LEDGF_dom_sf    TFIIS_cen_dom    TFIIS_cen_dom_sf    TFIIS_N   
Domain families : Pfam (Sanger)Med26 (PF08711)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam08711    pfam07500   
Domain families : Smart (EMBL)TFS2M (SM00510)  
Conserved Domain (NCBI)TCEANC
Blocks (Seattle)TCEANC
SuperfamilyQ8N8B7
Human Protein Atlas [tissue]ENSG00000176896-TCEANC [tissue]
Peptide AtlasQ8N8B7
IPIIPI00970906   IPI00856085   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8B7
IntAct (EBI)Q8N8B7
BioGRIDTCEANC
STRING (EMBL)TCEANC
ZODIACTCEANC
Ontologies - Pathways
QuickGOQ8N8B7
Ontology : AmiGOprotein binding  nucleus  transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  transcription, DNA-templated  
NDEx NetworkTCEANC
Atlas of Cancer Signalling NetworkTCEANC
Wikipedia pathwaysTCEANC
Orthology - Evolution
OrthoDB170082
GeneTree (enSembl)ENSG00000176896
Phylogenetic Trees/Animal Genes : TreeFamTCEANC
HOGENOMQ8N8B7
Homologs : HomoloGeneTCEANC
Homology/Alignments : Family Browser (UCSC)TCEANC
Gene fusions - Rearrangements
Fusion : QuiverTCEANC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEANC [hg38]
dbVarTCEANC
ClinVarTCEANC
MonarchTCEANC
1000_GenomesTCEANC 
Exome Variant ServerTCEANC
GNOMAD BrowserENSG00000176896
Varsome BrowserTCEANC
Genomic Variants (DGV)TCEANC [DGVbeta]
DECIPHERTCEANC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEANC 
Mutations
ICGC Data PortalTCEANC 
TCGA Data PortalTCEANC 
Broad Tumor PortalTCEANC
OASIS PortalTCEANC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEANC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCEANC
Mutations and Diseases : HGMDTCEANC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEANC
DgiDB (Drug Gene Interaction Database)TCEANC
DoCM (Curated mutations)TCEANC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEANC (select a term)
intoGenTCEANC
Cancer3DTCEANC(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCEANC
MedgenTCEANC
Genetic Testing Registry TCEANC
NextProtQ8N8B7 [Medical]
GENETestsTCEANC
Target ValidationTCEANC
Huge Navigator TCEANC [HugePedia]
ClinGenTCEANC
Clinical trials, drugs, therapy
MyCancerGenomeTCEANC
Protein Interactions : CTD
Pharm GKB GenePA164726422
Clinical trialTCEANC
Miscellaneous
canSAR (ICR)TCEANC (select the gene name)
HarmonizomeTCEANC
DataMed IndexTCEANC
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEANC
EVEXTCEANC
GoPubMedTCEANC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:31:17 CET 2020

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