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TCEANC (transcription elongation factor A (SII) N-terminal and central domain containing)

Identity

Alias_namestranscription elongation factor A (SII) N-terminal and central domain containing
Alias_symbol (synonym)MGC17403
Other alias-
HGNC (Hugo) TCEANC
LocusID (NCBI) 170082
Atlas_Id 74569
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 13671225 and ends at 13683527 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TCEANC (Xp22.2) / EVPL (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEANC   28277
Cards
Entrez_Gene (NCBI)TCEANC  170082  transcription elongation factor A (SII) N-terminal and central domain containing
Aliases
GeneCards (Weizmann)TCEANC
Ensembl hg19 (Hinxton) [Gene_View]  chrX:13671225-13683527 [Contig_View]  TCEANC [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:13671225-13683527 [Contig_View]  TCEANC [Vega]
TCGA cBioPortalTCEANC
AceView (NCBI)TCEANC
Genatlas (Paris)TCEANC
WikiGenes170082
SOURCE (Princeton)TCEANC
Genetics Home Reference (NIH)TCEANC
Genomic and cartography
GoldenPath hg19 (UCSC)TCEANC  -     chrX:13671225-13683527 +  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCEANC  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblTCEANC - Xp22.2 [CytoView hg19]  TCEANC - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBITCEANC [Mapview hg19]  TCEANC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097032 AK291271 AK294465 AK315599 BC020095
RefSeq transcript (Entrez)NM_001297563 NM_001297564 NM_152634
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)TCEANC
Cluster EST : UnigeneHs.737398 [ NCBI ]
CGAP (NCI)Hs.737398
Gene ExpressionTCEANC [ NCBI-GEO ]   TCEANC [ EBI - ARRAY_EXPRESS ]   TCEANC [ SEEK ]   TCEANC [ MEM ]
Gene Expression Viewer (FireBrowse)TCEANC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170082
GTEX Portal (Tissue expression)TCEANC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8B7
Splice isoforms : SwissVarQ8N8B7
PhosPhoSitePlusQ8N8B7
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)   
Domains : Interpro (EBI)TF_IIS-rel    TFIIS_cen_dom    TFIIS_N   
Domain families : Pfam (Sanger)Med26 (PF08711)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam08711    pfam07500   
Conserved Domain (NCBI)TCEANC
DMDM Disease mutations170082
Blocks (Seattle)TCEANC
SuperfamilyQ8N8B7
Peptide AtlasQ8N8B7
IPIIPI00970906   IPI00856085   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8B7
IntAct (EBI)Q8N8B7
BioGRIDTCEANC
STRING (EMBL)TCEANC
ZODIACTCEANC
Ontologies - Pathways
QuickGOQ8N8B7
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  regulation of DNA-templated transcription, elongation  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  regulation of DNA-templated transcription, elongation  
NDEx NetworkTCEANC
Atlas of Cancer Signalling NetworkTCEANC
Wikipedia pathwaysTCEANC
Orthology - Evolution
OrthoDB170082
Phylogenetic Trees/Animal Genes : TreeFamTCEANC
HOVERGENQ8N8B7
HOGENOMQ8N8B7
Homologs : HomoloGeneTCEANC
Homology/Alignments : Family Browser (UCSC)TCEANC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEANC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEANC
dbVarTCEANC
ClinVarTCEANC
1000_GenomesTCEANC 
Exome Variant ServerTCEANC
ExAC (Exome Aggregation Consortium)TCEANC (select the gene name)
Genetic variants : HAPMAP170082
Genomic Variants (DGV)TCEANC [DGVbeta]
DECIPHER (Syndromes)X:13671225-13683527  
CONAN: Copy Number AnalysisTCEANC 
Mutations
ICGC Data PortalTCEANC 
TCGA Data PortalTCEANC 
Broad Tumor PortalTCEANC
OASIS PortalTCEANC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEANC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEANC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEANC
DgiDB (Drug Gene Interaction Database)TCEANC
DoCM (Curated mutations)TCEANC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEANC (select a term)
intoGenTCEANC
Cancer3DTCEANC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEANC
Genetic Testing Registry TCEANC
NextProtQ8N8B7 [Medical]
TSGene170082
GENETestsTCEANC
Huge Navigator TCEANC [HugePedia]
snp3D : Map Gene to Disease170082
BioCentury BCIQTCEANC
ClinGenTCEANC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170082
Chemical/Pharm GKB GenePA164726422
Clinical trialTCEANC
Miscellaneous
canSAR (ICR)TCEANC (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEANC
EVEXTCEANC
GoPubMedTCEANC
iHOPTCEANC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:39 CET 2017

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