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TCEANC2 (transcription elongation factor A (SII) N-terminal and central domain containing 2)

Identity

Alias_namesC1orf83
chromosome 1 open reading frame 83
transcription elongation factor A (SII) N-terminal and central domain containing 2
Alias_symbol (synonym)FLJ32112
Other alias
HGNC (Hugo) TCEANC2
LocusID (NCBI) 127428
Atlas_Id 74570
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54519245 and ends at 54567321 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM117B (2q33.2) / TCEANC2 (1p32.3)HBB (11p15.4) / TCEANC2 (1p32.3)TCEANC2 (1p32.3) / AP2A1 (19q13.33)
TCEANC2 (1p32.3) / TCEANC2 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEANC2   26494
Cards
Entrez_Gene (NCBI)TCEANC2  127428  transcription elongation factor A (SII) N-terminal and central domain containing 2
AliasesC1orf83
GeneCards (Weizmann)TCEANC2
Ensembl hg19 (Hinxton) [Gene_View]  chr1:54519245-54567321 [Contig_View]  TCEANC2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:54519245-54567321 [Contig_View]  TCEANC2 [Vega]
TCGA cBioPortalTCEANC2
AceView (NCBI)TCEANC2
Genatlas (Paris)TCEANC2
WikiGenes127428
SOURCE (Princeton)TCEANC2
Genetics Home Reference (NIH)TCEANC2
Genomic and cartography
GoldenPath hg19 (UCSC)TCEANC2  -     chr1:54519245-54567321 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCEANC2  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblTCEANC2 - 1p32.3 [CytoView hg19]  TCEANC2 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBITCEANC2 [Mapview hg19]  TCEANC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056674 AK096488 AL049253 BC035374 DA760038
RefSeq transcript (Entrez)NM_153035
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TCEANC2
Cluster EST : UnigeneHs.558618 [ NCBI ]
CGAP (NCI)Hs.558618
Gene ExpressionTCEANC2 [ NCBI-GEO ]   TCEANC2 [ EBI - ARRAY_EXPRESS ]   TCEANC2 [ SEEK ]   TCEANC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEANC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127428
GTEX Portal (Tissue expression)TCEANC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MN5
Splice isoforms : SwissVarQ96MN5
PhosPhoSitePlusQ96MN5
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)   
Domains : Interpro (EBI)TFIIS_cen_dom    TFIIS_N   
Domain families : Pfam (Sanger)Med26 (PF08711)    TFIIS_M (PF07500)   
Domain families : Pfam (NCBI)pfam08711    pfam07500   
Conserved Domain (NCBI)TCEANC2
DMDM Disease mutations127428
Blocks (Seattle)TCEANC2
SuperfamilyQ96MN5
Peptide AtlasQ96MN5
HPRD08722
IPIIPI00645722   IPI00845424   IPI00012687   
Protein Interaction databases
DIP (DOE-UCLA)Q96MN5
IntAct (EBI)Q96MN5
BioGRIDTCEANC2
STRING (EMBL)TCEANC2
ZODIACTCEANC2
Ontologies - Pathways
QuickGOQ96MN5
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  
NDEx NetworkTCEANC2
Atlas of Cancer Signalling NetworkTCEANC2
Wikipedia pathwaysTCEANC2
Orthology - Evolution
OrthoDB127428
Phylogenetic Trees/Animal Genes : TreeFamTCEANC2
HOVERGENQ96MN5
HOGENOMQ96MN5
Homologs : HomoloGeneTCEANC2
Homology/Alignments : Family Browser (UCSC)TCEANC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEANC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEANC2
dbVarTCEANC2
ClinVarTCEANC2
1000_GenomesTCEANC2 
Exome Variant ServerTCEANC2
ExAC (Exome Aggregation Consortium)TCEANC2 (select the gene name)
Genetic variants : HAPMAP127428
Genomic Variants (DGV)TCEANC2 [DGVbeta]
DECIPHER (Syndromes)1:54519245-54567321  
CONAN: Copy Number AnalysisTCEANC2 
Mutations
ICGC Data PortalTCEANC2 
TCGA Data PortalTCEANC2 
Broad Tumor PortalTCEANC2
OASIS PortalTCEANC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEANC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEANC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEANC2
DgiDB (Drug Gene Interaction Database)TCEANC2
DoCM (Curated mutations)TCEANC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEANC2 (select a term)
intoGenTCEANC2
Cancer3DTCEANC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEANC2
Genetic Testing Registry TCEANC2
NextProtQ96MN5 [Medical]
TSGene127428
GENETestsTCEANC2
Huge Navigator TCEANC2 [HugePedia]
snp3D : Map Gene to Disease127428
BioCentury BCIQTCEANC2
ClinGenTCEANC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127428
Chemical/Pharm GKB GenePA142672531
Clinical trialTCEANC2
Miscellaneous
canSAR (ICR)TCEANC2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEANC2
EVEXTCEANC2
GoPubMedTCEANC2
iHOPTCEANC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:40 CET 2017

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