Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCEANC2 (transcription elongation factor A N-terminal and central domain containing 2)

Identity

Alias (NCBI)C1orf83
HGNC (Hugo) TCEANC2
HGNC Alias symbFLJ32112
HGNC Previous nameC1orf83
HGNC Previous namechromosome 1 open reading frame 83
 transcription elongation factor A (SII) N-terminal and central domain containing 2
LocusID (NCBI) 127428
Atlas_Id 74570
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54053608 and ends at 54106079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM117B (2q33.2) / TCEANC2 (1p32.3)HBB (11p15.4) / TCEANC2 (1p32.3)TCEANC2 (1p32.3) / AP2A1 (19q13.33)
TCEANC2 (1p32.3) / TCEANC2 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCEANC2   26494
Cards
Entrez_Gene (NCBI)TCEANC2    transcription elongation factor A N-terminal and central domain containing 2
AliasesC1orf83
GeneCards (Weizmann)TCEANC2
Ensembl hg19 (Hinxton)ENSG00000116205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116205 [Gene_View]  ENSG00000116205 [Sequence]  chr1:54053608-54106079 [Contig_View]  TCEANC2 [Vega]
ICGC DataPortalENSG00000116205
TCGA cBioPortalTCEANC2
AceView (NCBI)TCEANC2
Genatlas (Paris)TCEANC2
SOURCE (Princeton)TCEANC2
Genetics Home Reference (NIH)TCEANC2
Genomic and cartography
GoldenPath hg38 (UCSC)TCEANC2  -     chr1:54053608-54106079 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEANC2  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathTCEANC2 - 1p32.3 [CytoView hg19]  TCEANC2 - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000116205
Genome Data Viewer NCBITCEANC2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056674 AK096488 AL049253 BC035374 DA760038
RefSeq transcript (Entrez)NM_153035
Consensus coding sequences : CCDS (NCBI)TCEANC2
Gene ExpressionTCEANC2 [ NCBI-GEO ]   TCEANC2 [ EBI - ARRAY_EXPRESS ]   TCEANC2 [ SEEK ]   TCEANC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEANC2 [ Firebrowse - Broad ]
GenevisibleExpression of TCEANC2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127428
GTEX Portal (Tissue expression)TCEANC2
Human Protein AtlasENSG00000116205-TCEANC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MN5
PhosPhoSitePlusQ96MN5
Domaine pattern : Prosite (Expaxy)TFIIS_CENTRAL (PS51321)    TFIIS_N (PS51319)   
Domains : Interpro (EBI)TFIIS/CRSP70_N_sub    TFIIS/LEDGF_dom_sf    TFIIS_cen_dom    TFIIS_cen_dom_sf    TFIIS_N   
Domain families : Pfam (Sanger)Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam08711   
Domain families : Smart (EMBL)TFS2N (SM00509)  
Conserved Domain (NCBI)TCEANC2
SuperfamilyQ96MN5
AlphaFold pdb e-kbQ96MN5   
Human Protein Atlas [tissue]ENSG00000116205-TCEANC2 [tissue]
HPRD08722
Protein Interaction databases
DIP (DOE-UCLA)Q96MN5
IntAct (EBI)Q96MN5
BioGRIDTCEANC2
STRING (EMBL)TCEANC2
ZODIACTCEANC2
Ontologies - Pathways
QuickGOQ96MN5
Ontology : AmiGOprotein binding  nucleus  transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  transcription, DNA-templated  
NDEx NetworkTCEANC2
Atlas of Cancer Signalling NetworkTCEANC2
Wikipedia pathwaysTCEANC2
Orthology - Evolution
OrthoDB127428
GeneTree (enSembl)ENSG00000116205
Phylogenetic Trees/Animal Genes : TreeFamTCEANC2
Homologs : HomoloGeneTCEANC2
Homology/Alignments : Family Browser (UCSC)TCEANC2
Gene fusions - Rearrangements
Fusion : QuiverTCEANC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEANC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEANC2
dbVarTCEANC2
ClinVarTCEANC2
MonarchTCEANC2
1000_GenomesTCEANC2 
Exome Variant ServerTCEANC2
GNOMAD BrowserENSG00000116205
Varsome BrowserTCEANC2
ACMGTCEANC2 variants
VarityQ96MN5
Genomic Variants (DGV)TCEANC2 [DGVbeta]
DECIPHERTCEANC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEANC2 
Mutations
ICGC Data PortalTCEANC2 
TCGA Data PortalTCEANC2 
Broad Tumor PortalTCEANC2
OASIS PortalTCEANC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEANC2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCEANC2
Mutations and Diseases : HGMDTCEANC2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCEANC2
DgiDB (Drug Gene Interaction Database)TCEANC2
DoCM (Curated mutations)TCEANC2
CIViC (Clinical Interpretations of Variants in Cancer)TCEANC2
Cancer3DTCEANC2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCEANC2
MedgenTCEANC2
Genetic Testing Registry TCEANC2
NextProtQ96MN5 [Medical]
GENETestsTCEANC2
Target ValidationTCEANC2
Huge Navigator TCEANC2 [HugePedia]
ClinGenTCEANC2
Clinical trials, drugs, therapy
MyCancerGenomeTCEANC2
Protein Interactions : CTDTCEANC2
Pharm GKB GenePA142672531
PharosQ96MN5
Clinical trialTCEANC2
Miscellaneous
canSAR (ICR)TCEANC2
HarmonizomeTCEANC2
DataMed IndexTCEANC2
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCEANC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:03 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.