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TCEB3 (transcription elongation factor B subunit 3)

Identity

Alias_namestranscription elongation factor B (SIII)
Alias_symbol (synonym)SIII
TCEB3A
Other aliasEloA
SIII p110
HGNC (Hugo) TCEB3
LocusID (NCBI) 6924
Atlas_Id 42492
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24069856 and ends at 24088549 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPL11 (1p36.11) / TCEB3 (1p36.11)TCEB3 (1p36.11) / IFT140 (16p13.3)TCEB3 (1p36.11) / ZCCHC11 (1p32.3)
WNK1 (12p13.33) / TCEB3 (1p36.11)TCEB3 1p36.11 / IFT140 16p13.3TCEB3 1p36.11 / ZCCHC11 1p32.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEB3   11620
Cards
Entrez_Gene (NCBI)TCEB3  6924  transcription elongation factor B subunit 3
AliasesEloA; SIII; SIII; TCEB3A
GeneCards (Weizmann)TCEB3
Ensembl hg19 (Hinxton)ENSG00000011007 [Gene_View]  chr1:24069856-24088549 [Contig_View]  TCEB3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000011007 [Gene_View]  chr1:24069856-24088549 [Contig_View]  TCEB3 [Vega]
ICGC DataPortalENSG00000011007
TCGA cBioPortalTCEB3
AceView (NCBI)TCEB3
Genatlas (Paris)TCEB3
WikiGenes6924
SOURCE (Princeton)TCEB3
Genetics Home Reference (NIH)TCEB3
Genomic and cartography
GoldenPath hg19 (UCSC)TCEB3  -     chr1:24069856-24088549 +  1p36.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCEB3  -     1p36.11   [Description]    (hg38-Dec_2013)
EnsemblTCEB3 - 1p36.11 [CytoView hg19]  TCEB3 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBITCEB3 [Mapview hg19]  TCEB3 [Mapview hg38]
OMIM600786   
Gene and transcription
Genbank (Entrez)AF070554 AF116729 AK096079 AK310229 AK313079
RefSeq transcript (Entrez)NM_003198
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)TCEB3
Cluster EST : UnigeneHs.15535 [ NCBI ]
CGAP (NCI)Hs.15535
Alternative Splicing GalleryENSG00000011007
Gene ExpressionTCEB3 [ NCBI-GEO ]   TCEB3 [ EBI - ARRAY_EXPRESS ]   TCEB3 [ SEEK ]   TCEB3 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6924
GTEX Portal (Tissue expression)TCEB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14241   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14241  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14241
Splice isoforms : SwissVarQ14241
PhosPhoSitePlusQ14241
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    TFIIS_N (PS51319)   
Domains : Interpro (EBI)F-box_dom    RNA_pol_II_trans_fac_SIII_A    TFIIS/CRSP70_N_sub    TFIIS_N   
Domain families : Pfam (Sanger)Elongin_A (PF06881)    Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam06881    pfam08711   
Domain families : Smart (EMBL)TFS2N (SM00509)  
Conserved Domain (NCBI)TCEB3
DMDM Disease mutations6924
Blocks (Seattle)TCEB3
PDB (SRS)4HFX   
PDB (PDBSum)4HFX   
PDB (IMB)4HFX   
PDB (RSDB)4HFX   
Structural Biology KnowledgeBase4HFX   
SCOP (Structural Classification of Proteins)4HFX   
CATH (Classification of proteins structures)4HFX   
SuperfamilyQ14241
Human Protein AtlasENSG00000011007
Peptide AtlasQ14241
HPRD02873
IPIIPI00941732   
Protein Interaction databases
DIP (DOE-UCLA)Q14241
IntAct (EBI)Q14241
FunCoupENSG00000011007
BioGRIDTCEB3
STRING (EMBL)TCEB3
ZODIACTCEB3
Ontologies - Pathways
QuickGOQ14241
Ontology : AmiGODNA binding  protein binding  extracellular space  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  integral component of membrane  elongin complex  
Ontology : EGO-EBIDNA binding  protein binding  extracellular space  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  integral component of membrane  elongin complex  
NDEx NetworkTCEB3
Atlas of Cancer Signalling NetworkTCEB3
Wikipedia pathwaysTCEB3
Orthology - Evolution
OrthoDB6924
GeneTree (enSembl)ENSG00000011007
Phylogenetic Trees/Animal Genes : TreeFamTCEB3
HOVERGENQ14241
HOGENOMQ14241
Homologs : HomoloGeneTCEB3
Homology/Alignments : Family Browser (UCSC)TCEB3
Gene fusions - Rearrangements
Fusion : MitelmanTCEB3/IFT140 [1p36.11/16p13.3]  
Fusion : MitelmanTCEB3/ZCCHC11 [1p36.11/1p32.3]  [t(1;1)(p32;p36)]  
Fusion: TCGATCEB3 1p36.11 IFT140 16p13.3 BRCA
Fusion: TCGATCEB3 1p36.11 ZCCHC11 1p32.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEB3
dbVarTCEB3
ClinVarTCEB3
1000_GenomesTCEB3 
Exome Variant ServerTCEB3
ExAC (Exome Aggregation Consortium)TCEB3 (select the gene name)
Genetic variants : HAPMAP6924
Genomic Variants (DGV)TCEB3 [DGVbeta]
DECIPHER (Syndromes)1:24069856-24088549  ENSG00000011007
CONAN: Copy Number AnalysisTCEB3 
Mutations
ICGC Data PortalTCEB3 
TCGA Data PortalTCEB3 
Broad Tumor PortalTCEB3
OASIS PortalTCEB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEB3
DgiDB (Drug Gene Interaction Database)TCEB3
DoCM (Curated mutations)TCEB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEB3 (select a term)
intoGenTCEB3
Cancer3DTCEB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600786   
Orphanet
MedgenTCEB3
Genetic Testing Registry TCEB3
NextProtQ14241 [Medical]
TSGene6924
GENETestsTCEB3
Huge Navigator TCEB3 [HugePedia]
snp3D : Map Gene to Disease6924
BioCentury BCIQTCEB3
ClinGenTCEB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6924
Chemical/Pharm GKB GenePA36379
Clinical trialTCEB3
Miscellaneous
canSAR (ICR)TCEB3 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEB3
EVEXTCEB3
GoPubMedTCEB3
iHOPTCEB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:35 CET 2017

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