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TCEB3B (transcription elongation factor B polypeptide 3B (elongin A2))

Identity

Alias_namestranscription elongation factor B polypeptide 3B (elongin A2)
Alias_symbol (synonym)HsT832
TCEB3L
Other aliasELOA2
HGNC (Hugo) TCEB3B
LocusID (NCBI) 51224
Atlas_Id 74572
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 44558943 and ends at 44561988 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEB3B   30771
Cards
Entrez_Gene (NCBI)TCEB3B  51224  transcription elongation factor B polypeptide 3B (elongin A2)
AliasesELOA2; HsT832; TCEB3L
GeneCards (Weizmann)TCEB3B
Ensembl hg19 (Hinxton)ENSG00000206181 [Gene_View]  chr18:44558943-44561988 [Contig_View]  TCEB3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000206181 [Gene_View]  chr18:44558943-44561988 [Contig_View]  TCEB3B [Vega]
ICGC DataPortalENSG00000206181
TCGA cBioPortalTCEB3B
AceView (NCBI)TCEB3B
Genatlas (Paris)TCEB3B
WikiGenes51224
SOURCE (Princeton)TCEB3B
Genetics Home Reference (NIH)TCEB3B
Genomic and cartography
GoldenPath hg19 (UCSC)TCEB3B  -     chr18:44558943-44561988 -  18q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCEB3B  -     18q21.1   [Description]    (hg38-Dec_2013)
EnsemblTCEB3B - 18q21.1 [CytoView hg19]  TCEB3B - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBITCEB3B [Mapview hg19]  TCEB3B [Mapview hg38]
OMIM609522   
Gene and transcription
Genbank (Entrez)AB030834 AK314984 BC036022 BC103911 JF432262
RefSeq transcript (Entrez)NM_016427
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)TCEB3B
Cluster EST : UnigeneHs.375035 [ NCBI ]
CGAP (NCI)Hs.375035
Alternative Splicing GalleryENSG00000206181
Gene ExpressionTCEB3B [ NCBI-GEO ]   TCEB3B [ EBI - ARRAY_EXPRESS ]   TCEB3B [ SEEK ]   TCEB3B [ MEM ]
Gene Expression Viewer (FireBrowse)TCEB3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51224
GTEX Portal (Tissue expression)TCEB3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYF1
Splice isoforms : SwissVarQ8IYF1
PhosPhoSitePlusQ8IYF1
Domaine pattern : Prosite (Expaxy)TFIIS_N (PS51319)   
Domains : Interpro (EBI)RNA_pol_II_trans_fac_SIII_A    TFIIS/CRSP70_N_sub    TFIIS_N   
Domain families : Pfam (Sanger)Elongin_A (PF06881)    Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam06881    pfam08711   
Domain families : Smart (EMBL)TFS2N (SM00509)  
Conserved Domain (NCBI)TCEB3B
DMDM Disease mutations51224
Blocks (Seattle)TCEB3B
SuperfamilyQ8IYF1
Human Protein AtlasENSG00000206181
Peptide AtlasQ8IYF1
HPRD18169
IPIIPI00376867   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYF1
IntAct (EBI)Q8IYF1
FunCoupENSG00000206181
BioGRIDTCEB3B
STRING (EMBL)TCEB3B
ZODIACTCEB3B
Ontologies - Pathways
QuickGOQ8IYF1
Ontology : AmiGODNA binding  ubiquitin-protein transferase activity  protein binding  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  integral component of membrane  regulation of DNA-templated transcription, elongation  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  elongin complex  
Ontology : EGO-EBIDNA binding  ubiquitin-protein transferase activity  protein binding  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  integral component of membrane  regulation of DNA-templated transcription, elongation  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  elongin complex  
NDEx NetworkTCEB3B
Atlas of Cancer Signalling NetworkTCEB3B
Wikipedia pathwaysTCEB3B
Orthology - Evolution
OrthoDB51224
GeneTree (enSembl)ENSG00000206181
Phylogenetic Trees/Animal Genes : TreeFamTCEB3B
HOVERGENQ8IYF1
HOGENOMQ8IYF1
Homologs : HomoloGeneTCEB3B
Homology/Alignments : Family Browser (UCSC)TCEB3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEB3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEB3B
dbVarTCEB3B
ClinVarTCEB3B
1000_GenomesTCEB3B 
Exome Variant ServerTCEB3B
ExAC (Exome Aggregation Consortium)TCEB3B (select the gene name)
Genetic variants : HAPMAP51224
Genomic Variants (DGV)TCEB3B [DGVbeta]
DECIPHER (Syndromes)18:44558943-44561988  ENSG00000206181
CONAN: Copy Number AnalysisTCEB3B 
Mutations
ICGC Data PortalTCEB3B 
TCGA Data PortalTCEB3B 
Broad Tumor PortalTCEB3B
OASIS PortalTCEB3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEB3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEB3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEB3B
DgiDB (Drug Gene Interaction Database)TCEB3B
DoCM (Curated mutations)TCEB3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEB3B (select a term)
intoGenTCEB3B
Cancer3DTCEB3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609522   
Orphanet
MedgenTCEB3B
Genetic Testing Registry TCEB3B
NextProtQ8IYF1 [Medical]
TSGene51224
GENETestsTCEB3B
Huge Navigator TCEB3B [HugePedia]
snp3D : Map Gene to Disease51224
BioCentury BCIQTCEB3B
ClinGenTCEB3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51224
Chemical/Pharm GKB GenePA134932220
Clinical trialTCEB3B
Miscellaneous
canSAR (ICR)TCEB3B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEB3B
EVEXTCEB3B
GoPubMedTCEB3B
iHOPTCEB3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:40 CET 2017

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