Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCEB3C (transcription elongation factor B subunit 3C)

Identity

Alias_namestranscription elongation factor B polypeptide 3C (elongin A3)
Alias_symbol (synonym)HsT829
TCEB3L2
Other alias
HGNC (Hugo) TCEB3C
LocusID (NCBI) 162699
Atlas_Id 74573
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 47022287 and ends at 47024163 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEB3C   24617
Cards
Entrez_Gene (NCBI)TCEB3C  162699  transcription elongation factor B subunit 3C
AliasesHsT829; TCEB3L2
GeneCards (Weizmann)TCEB3C
Ensembl hg19 (Hinxton)ENSG00000183791 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183791 [Gene_View]  chr18:47022287-47024163 [Contig_View]  TCEB3C [Vega]
ICGC DataPortalENSG00000183791
TCGA cBioPortalTCEB3C
AceView (NCBI)TCEB3C
Genatlas (Paris)TCEB3C
WikiGenes162699
SOURCE (Princeton)TCEB3C
Genetics Home Reference (NIH)TCEB3C
Genomic and cartography
GoldenPath hg38 (UCSC)TCEB3C  -     chr18:47022287-47024163 -  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCEB3C  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblTCEB3C - 18q21.1 [CytoView hg19]  TCEB3C - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBITCEB3C [Mapview hg19]  TCEB3C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076840 BC172326 BQ185879 EU446606
RefSeq transcript (Entrez)NM_145653
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCEB3C
Cluster EST : UnigeneHs.729823 [ NCBI ]
CGAP (NCI)Hs.729823
Alternative Splicing GalleryENSG00000183791
Gene ExpressionTCEB3C [ NCBI-GEO ]   TCEB3C [ EBI - ARRAY_EXPRESS ]   TCEB3C [ SEEK ]   TCEB3C [ MEM ]
Gene Expression Viewer (FireBrowse)TCEB3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162699
GTEX Portal (Tissue expression)TCEB3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG57
Splice isoforms : SwissVarQ8NG57
PhosPhoSitePlusQ8NG57
Domaine pattern : Prosite (Expaxy)TFIIS_N (PS51319)   
Domains : Interpro (EBI)RNA_pol_II_trans_fac_SIII_A    TFIIS/CRSP70_N_sub    TFIIS_N   
Domain families : Pfam (Sanger)Elongin_A (PF06881)    Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam06881    pfam08711   
Domain families : Smart (EMBL)TFS2N (SM00509)  
Conserved Domain (NCBI)TCEB3C
DMDM Disease mutations162699
Blocks (Seattle)TCEB3C
SuperfamilyQ8NG57
Human Protein AtlasENSG00000183791
Peptide AtlasQ8NG57
HPRD15479
IPIIPI00168919   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG57
IntAct (EBI)Q8NG57
FunCoupENSG00000183791
BioGRIDTCEB3C
STRING (EMBL)TCEB3C
ZODIACTCEB3C
Ontologies - Pathways
QuickGOQ8NG57
Ontology : AmiGOnucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  integral component of membrane  elongin complex  
Ontology : EGO-EBInucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  integral component of membrane  elongin complex  
NDEx NetworkTCEB3C
Atlas of Cancer Signalling NetworkTCEB3C
Wikipedia pathwaysTCEB3C
Orthology - Evolution
OrthoDB162699
GeneTree (enSembl)ENSG00000183791
Phylogenetic Trees/Animal Genes : TreeFamTCEB3C
HOVERGENQ8NG57
HOGENOMQ8NG57
Homologs : HomoloGeneTCEB3C
Homology/Alignments : Family Browser (UCSC)TCEB3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEB3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEB3C
dbVarTCEB3C
ClinVarTCEB3C
1000_GenomesTCEB3C 
Exome Variant ServerTCEB3C
ExAC (Exome Aggregation Consortium)TCEB3C (select the gene name)
Genetic variants : HAPMAP162699
Genomic Variants (DGV)TCEB3C [DGVbeta]
DECIPHERTCEB3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCEB3C 
Mutations
ICGC Data PortalTCEB3C 
TCGA Data PortalTCEB3C 
Broad Tumor PortalTCEB3C
OASIS PortalTCEB3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEB3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEB3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEB3C
DgiDB (Drug Gene Interaction Database)TCEB3C
DoCM (Curated mutations)TCEB3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEB3C (select a term)
intoGenTCEB3C
Cancer3DTCEB3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEB3C
Genetic Testing Registry TCEB3C
NextProtQ8NG57 [Medical]
TSGene162699
GENETestsTCEB3C
Target ValidationTCEB3C
Huge Navigator TCEB3C [HugePedia]
snp3D : Map Gene to Disease162699
BioCentury BCIQTCEB3C
ClinGenTCEB3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162699
Chemical/Pharm GKB GenePA134940475
Clinical trialTCEB3C
Miscellaneous
canSAR (ICR)TCEB3C (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEB3C
EVEXTCEB3C
GoPubMedTCEB3C
iHOPTCEB3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:05 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.