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TCEB3CL (transcription elongation factor B polypeptide 3C-like)

Identity

Alias_namestranscription elongation factor B polypeptide 3C-like
Alias_symbol (synonym)HsT828
Other aliaseloA3-like-1
HGNC (Hugo) TCEB3CL
LocusID (NCBI) 728929
Atlas_Id 74574
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 44542731 and ends at 44544371 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEB3CL   31007
Cards
Entrez_Gene (NCBI)TCEB3CL  728929  transcription elongation factor B polypeptide 3C-like
AliasesHsT828; eloA3-like-1
GeneCards (Weizmann)TCEB3CL
Ensembl hg19 (Hinxton) [Gene_View]  chr18:44542731-44544371 [Contig_View]  TCEB3CL [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:44542731-44544371 [Contig_View]  TCEB3CL [Vega]
TCGA cBioPortalTCEB3CL
AceView (NCBI)TCEB3CL
Genatlas (Paris)TCEB3CL
WikiGenes728929
SOURCE (Princeton)TCEB3CL
Genetics Home Reference (NIH)TCEB3CL
Genomic and cartography
GoldenPath hg19 (UCSC)TCEB3CL  -     chr18:44542731-44544371 -  18q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCEB3CL  -     18q21.1   [Description]    (hg38-Dec_2013)
EnsemblTCEB3CL - 18q21.1 [CytoView hg19]  TCEB3CL - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBITCEB3CL [Mapview hg19]  TCEB3CL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC103912 BC103913
RefSeq transcript (Entrez)NM_001100817
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)TCEB3CL
Cluster EST : UnigeneHs.745535 [ NCBI ]
CGAP (NCI)Hs.745535
Gene ExpressionTCEB3CL [ NCBI-GEO ]   TCEB3CL [ EBI - ARRAY_EXPRESS ]   TCEB3CL [ SEEK ]   TCEB3CL [ MEM ]
Gene Expression Viewer (FireBrowse)TCEB3CL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728929
GTEX Portal (Tissue expression)TCEB3CL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SY89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SY89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SY89
Splice isoforms : SwissVarQ3SY89
PhosPhoSitePlusQ3SY89
Domaine pattern : Prosite (Expaxy)TFIIS_N (PS51319)   
Domains : Interpro (EBI)RNA_pol_II_trans_fac_SIII_A    TFIIS_N   
Domain families : Pfam (Sanger)Elongin_A (PF06881)    Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam06881    pfam08711   
Conserved Domain (NCBI)TCEB3CL
DMDM Disease mutations728929
Blocks (Seattle)TCEB3CL
SuperfamilyQ3SY89
Peptide AtlasQ3SY89
IPIIPI00735473   
Protein Interaction databases
DIP (DOE-UCLA)Q3SY89
IntAct (EBI)Q3SY89
BioGRIDTCEB3CL
STRING (EMBL)TCEB3CL
ZODIACTCEB3CL
Ontologies - Pathways
QuickGOQ3SY89
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  integral component of membrane  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  integral component of membrane  
NDEx NetworkTCEB3CL
Atlas of Cancer Signalling NetworkTCEB3CL
Wikipedia pathwaysTCEB3CL
Orthology - Evolution
OrthoDB728929
Phylogenetic Trees/Animal Genes : TreeFamTCEB3CL
HOVERGENQ3SY89
HOGENOMQ3SY89
Homologs : HomoloGeneTCEB3CL
Homology/Alignments : Family Browser (UCSC)TCEB3CL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEB3CL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEB3CL
dbVarTCEB3CL
ClinVarTCEB3CL
1000_GenomesTCEB3CL 
Exome Variant ServerTCEB3CL
ExAC (Exome Aggregation Consortium)TCEB3CL (select the gene name)
Genetic variants : HAPMAP728929
Genomic Variants (DGV)TCEB3CL [DGVbeta]
DECIPHER (Syndromes)18:44542731-44544371  
CONAN: Copy Number AnalysisTCEB3CL 
Mutations
ICGC Data PortalTCEB3CL 
TCGA Data PortalTCEB3CL 
Broad Tumor PortalTCEB3CL
OASIS PortalTCEB3CL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEB3CL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEB3CL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCEB3CL
DgiDB (Drug Gene Interaction Database)TCEB3CL
DoCM (Curated mutations)TCEB3CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEB3CL (select a term)
intoGenTCEB3CL
Cancer3DTCEB3CL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEB3CL
Genetic Testing Registry TCEB3CL
NextProtQ3SY89 [Medical]
TSGene728929
GENETestsTCEB3CL
Huge Navigator TCEB3CL [HugePedia]
snp3D : Map Gene to Disease728929
BioCentury BCIQTCEB3CL
ClinGenTCEB3CL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728929
Chemical/Pharm GKB GenePA134878695
Clinical trialTCEB3CL
Miscellaneous
canSAR (ICR)TCEB3CL (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEB3CL
EVEXTCEB3CL
GoPubMedTCEB3CL
iHOPTCEB3CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:40 CET 2017

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