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TCEB3CL2 (transcription elongation factor B polypeptide 3C-like 2)

Identity

Alias_namestranscription elongation factor B polypeptide 3C-like 2
Other alias-
HGNC (Hugo) TCEB3CL2
LocusID (NCBI) 100506888
Atlas_Id 74575
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 44542731 and ends at 44544607 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCEB3CL2   33511
Cards
Entrez_Gene (NCBI)TCEB3CL2  100506888  transcription elongation factor B polypeptide 3C-like 2
Aliases
GeneCards (Weizmann)TCEB3CL2
Ensembl hg19 (Hinxton)ENSG00000274744 [Gene_View]  chr18:44542731-44544607 [Contig_View]  TCEB3CL2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000274744 [Gene_View]  chr18:44542731-44544607 [Contig_View]  TCEB3CL2 [Vega]
ICGC DataPortalENSG00000274744
TCGA cBioPortalTCEB3CL2
AceView (NCBI)TCEB3CL2
Genatlas (Paris)TCEB3CL2
WikiGenes100506888
SOURCE (Princeton)TCEB3CL2
Genetics Home Reference (NIH)TCEB3CL2
Genomic and cartography
GoldenPath hg19 (UCSC)TCEB3CL2  -     chr18:44542731-44544607 -  18q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCEB3CL2  -     18q21.1   [Description]    (hg38-Dec_2013)
EnsemblTCEB3CL2 - 18q21.1 [CytoView hg19]  TCEB3CL2 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBITCEB3CL2 [Mapview hg19]  TCEB3CL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242907
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)TCEB3CL2
Cluster EST : UnigeneHs.729823 [ NCBI ]
CGAP (NCI)Hs.729823
Alternative Splicing GalleryENSG00000274744
Gene ExpressionTCEB3CL2 [ NCBI-GEO ]   TCEB3CL2 [ EBI - ARRAY_EXPRESS ]   TCEB3CL2 [ SEEK ]   TCEB3CL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCEB3CL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506888
GTEX Portal (Tissue expression)TCEB3CL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLF2
Splice isoforms : SwissVarA6NLF2
PhosPhoSitePlusA6NLF2
Domaine pattern : Prosite (Expaxy)TFIIS_N (PS51319)   
Domains : Interpro (EBI)RNA_pol_II_trans_fac_SIII_A    TFIIS_N   
Domain families : Pfam (Sanger)Elongin_A (PF06881)    Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam06881    pfam08711   
Conserved Domain (NCBI)TCEB3CL2
DMDM Disease mutations100506888
Blocks (Seattle)TCEB3CL2
SuperfamilyA6NLF2
Human Protein AtlasENSG00000274744
Peptide AtlasA6NLF2
Protein Interaction databases
DIP (DOE-UCLA)A6NLF2
IntAct (EBI)A6NLF2
FunCoupENSG00000274744
BioGRIDTCEB3CL2
STRING (EMBL)TCEB3CL2
ZODIACTCEB3CL2
Ontologies - Pathways
QuickGOA6NLF2
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  integral component of membrane  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  integral component of membrane  
NDEx NetworkTCEB3CL2
Atlas of Cancer Signalling NetworkTCEB3CL2
Wikipedia pathwaysTCEB3CL2
Orthology - Evolution
OrthoDB100506888
GeneTree (enSembl)ENSG00000274744
Phylogenetic Trees/Animal Genes : TreeFamTCEB3CL2
HOVERGENA6NLF2
HOGENOMA6NLF2
Homologs : HomoloGeneTCEB3CL2
Homology/Alignments : Family Browser (UCSC)TCEB3CL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCEB3CL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCEB3CL2
dbVarTCEB3CL2
ClinVarTCEB3CL2
1000_GenomesTCEB3CL2 
Exome Variant ServerTCEB3CL2
ExAC (Exome Aggregation Consortium)TCEB3CL2 (select the gene name)
Genetic variants : HAPMAP100506888
Genomic Variants (DGV)TCEB3CL2 [DGVbeta]
DECIPHER (Syndromes)18:44542731-44544607  ENSG00000274744
CONAN: Copy Number AnalysisTCEB3CL2 
Mutations
ICGC Data PortalTCEB3CL2 
TCGA Data PortalTCEB3CL2 
Broad Tumor PortalTCEB3CL2
OASIS PortalTCEB3CL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCEB3CL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCEB3CL2
BioMutasearch TCEB3CL2
DgiDB (Drug Gene Interaction Database)TCEB3CL2
DoCM (Curated mutations)TCEB3CL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCEB3CL2 (select a term)
intoGenTCEB3CL2
Cancer3DTCEB3CL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCEB3CL2
Genetic Testing Registry TCEB3CL2
NextProtA6NLF2 [Medical]
TSGene100506888
GENETestsTCEB3CL2
Huge Navigator TCEB3CL2 [HugePedia]
snp3D : Map Gene to Disease100506888
BioCentury BCIQTCEB3CL2
ClinGenTCEB3CL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506888
Clinical trialTCEB3CL2
Miscellaneous
canSAR (ICR)TCEB3CL2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCEB3CL2
EVEXTCEB3CL2
GoPubMedTCEB3CL2
iHOPTCEB3CL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:47:41 CET 2017

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