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TCERG1 (transcription elongation regulator 1)

Identity

Alias (NCBI)CA150
TAF2S
Urn1
HGNC (Hugo) TCERG1
HGNC Alias symbCA150
Urn1
HGNC Alias nametranscription factor CA150
 co-activator of 150 kDa
 TATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kD
 TATA box-binding protein-associated factor 2S
HGNC Previous nameTAF2S
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kD
LocusID (NCBI) 10915
Atlas_Id 74576
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 146447333 and ends at 146511959 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MAGI2-AS3 (7q21.11) / TCERG1 (5q32)RTN3 (11q13.1) / TCERG1 (5q32)TCERG1 (5q32) / RBM27 (5q32)
TCERG1 (5q32) / TCERG1 (5q32)XRN2 (20p11.23) / TCERG1 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCERG1   15630
Cards
Entrez_Gene (NCBI)TCERG1    transcription elongation regulator 1
AliasesCA150; TAF2S; Urn1
GeneCards (Weizmann)TCERG1
Ensembl hg19 (Hinxton)ENSG00000113649 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113649 [Gene_View]  ENSG00000113649 [Sequence]  chr5:146447333-146511959 [Contig_View]  TCERG1 [Vega]
ICGC DataPortalENSG00000113649
TCGA cBioPortalTCERG1
AceView (NCBI)TCERG1
Genatlas (Paris)TCERG1
SOURCE (Princeton)TCERG1
Genetics Home Reference (NIH)TCERG1
Genomic and cartography
GoldenPath hg38 (UCSC)TCERG1  -     chr5:146447333-146511959 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCERG1  -     5q32   [Description]    (hg19-Feb_2009)
GoldenPathTCERG1 - 5q32 [CytoView hg19]  TCERG1 - 5q32 [CytoView hg38]
ImmunoBaseENSG00000113649
Genome Data Viewer NCBITCERG1 [Mapview hg19]  
OMIM605409   
Gene and transcription
Genbank (Entrez)AB209910 AF017789 AK074511 AK126455 AK304319
RefSeq transcript (Entrez)NM_001040006 NM_001382548 NM_006706
Consensus coding sequences : CCDS (NCBI)TCERG1
Gene ExpressionTCERG1 [ NCBI-GEO ]   TCERG1 [ EBI - ARRAY_EXPRESS ]   TCERG1 [ SEEK ]   TCERG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCERG1 [ Firebrowse - Broad ]
GenevisibleExpression of TCERG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10915
GTEX Portal (Tissue expression)TCERG1
Human Protein AtlasENSG00000113649-TCERG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14776   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14776  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14776
PhosPhoSitePlusO14776
Domaine pattern : Prosite (Expaxy)FF (PS51676)    WW_DOMAIN_1 (PS01159)    WW_DOMAIN_2 (PS50020)   
Domains : Interpro (EBI)FF_domain    FF_domain_sf    WW_dom    WW_dom_sf   
Domain families : Pfam (Sanger)FF (PF01846)    WW (PF00397)   
Domain families : Pfam (NCBI)pfam01846    pfam00397   
Domain families : Smart (EMBL)FF (SM00441)  WW (SM00456)  
Conserved Domain (NCBI)TCERG1
PDB (RSDB)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
PDB Europe2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
PDB (PDBSum)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
PDB (IMB)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
Structural Biology KnowledgeBase2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
SCOP (Structural Classification of Proteins)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
CATH (Classification of proteins structures)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
SuperfamilyO14776
AlphaFold pdb e-kbO14776   
Human Protein Atlas [tissue]ENSG00000113649-TCERG1 [tissue]
HPRD10393
Protein Interaction databases
DIP (DOE-UCLA)O14776
IntAct (EBI)O14776
BioGRIDTCERG1
STRING (EMBL)TCERG1
ZODIACTCERG1
Ontologies - Pathways
QuickGOO14776
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  transcription elongation regulator activity  transcription coregulator activity  transcription coactivator activity  transcription corepressor activity  RNA binding  protein binding  nucleus  nucleoplasm  mRNA processing  RNA splicing  nuclear speck  positive regulation of transcription elongation from RNA polymerase II promoter  negative regulation of transcription elongation from RNA polymerase II promoter  identical protein binding  ubiquitin-like protein conjugating enzyme binding  positive regulation of transcription by RNA polymerase II  RNA polymerase II-specific DNA-binding transcription factor binding  RNA polymerase binding  RNA polymerase binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  transcription elongation regulator activity  transcription coregulator activity  transcription coactivator activity  transcription corepressor activity  RNA binding  protein binding  nucleus  nucleoplasm  mRNA processing  RNA splicing  nuclear speck  positive regulation of transcription elongation from RNA polymerase II promoter  negative regulation of transcription elongation from RNA polymerase II promoter  identical protein binding  ubiquitin-like protein conjugating enzyme binding  positive regulation of transcription by RNA polymerase II  RNA polymerase II-specific DNA-binding transcription factor binding  RNA polymerase binding  RNA polymerase binding  
NDEx NetworkTCERG1
Atlas of Cancer Signalling NetworkTCERG1
Wikipedia pathwaysTCERG1
Orthology - Evolution
OrthoDB10915
GeneTree (enSembl)ENSG00000113649
Phylogenetic Trees/Animal Genes : TreeFamTCERG1
Homologs : HomoloGeneTCERG1
Homology/Alignments : Family Browser (UCSC)TCERG1
Gene fusions - Rearrangements
Fusion : QuiverTCERG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCERG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCERG1
dbVarTCERG1
ClinVarTCERG1
MonarchTCERG1
1000_GenomesTCERG1 
Exome Variant ServerTCERG1
GNOMAD BrowserENSG00000113649
Varsome BrowserTCERG1
ACMGTCERG1 variants
VarityO14776
Genomic Variants (DGV)TCERG1 [DGVbeta]
DECIPHERTCERG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCERG1 
Mutations
ICGC Data PortalTCERG1 
TCGA Data PortalTCERG1 
Broad Tumor PortalTCERG1
OASIS PortalTCERG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCERG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCERG1
Mutations and Diseases : HGMDTCERG1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCERG1
DgiDB (Drug Gene Interaction Database)TCERG1
DoCM (Curated mutations)TCERG1
CIViC (Clinical Interpretations of Variants in Cancer)TCERG1
Cancer3DTCERG1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605409   
Orphanet
DisGeNETTCERG1
MedgenTCERG1
Genetic Testing Registry TCERG1
NextProtO14776 [Medical]
GENETestsTCERG1
Target ValidationTCERG1
Huge Navigator TCERG1 [HugePedia]
ClinGenTCERG1
Clinical trials, drugs, therapy
MyCancerGenomeTCERG1
Protein Interactions : CTDTCERG1
Pharm GKB GenePA38007
PharosO14776
Clinical trialTCERG1
Miscellaneous
canSAR (ICR)TCERG1
HarmonizomeTCERG1
DataMed IndexTCERG1
Probes
Litterature
PubMed89 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCERG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:04 CEST 2021

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