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TCERG1 (transcription elongation regulator 1)

Identity

Alias_namesTAF2S
TATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kD
Alias_symbol (synonym)CA150
Urn1
Other alias
HGNC (Hugo) TCERG1
LocusID (NCBI) 10915
Atlas_Id 74576
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 146447310 and ends at 146511506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAGI2-AS3 (7q21.11) / TCERG1 (5q32)RTN3 (11q13.1) / TCERG1 (5q32)TCERG1 (5q32) / RBM27 (5q32)
TCERG1 (5q32) / TCERG1 (5q32)XRN2 (20p11.23) / TCERG1 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCERG1   15630
Cards
Entrez_Gene (NCBI)TCERG1  10915  transcription elongation regulator 1
AliasesCA150; TAF2S; Urn1
GeneCards (Weizmann)TCERG1
Ensembl hg19 (Hinxton)ENSG00000113649 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113649 [Gene_View]  chr5:146447310-146511506 [Contig_View]  TCERG1 [Vega]
ICGC DataPortalENSG00000113649
TCGA cBioPortalTCERG1
AceView (NCBI)TCERG1
Genatlas (Paris)TCERG1
WikiGenes10915
SOURCE (Princeton)TCERG1
Genetics Home Reference (NIH)TCERG1
Genomic and cartography
GoldenPath hg38 (UCSC)TCERG1  -     chr5:146447310-146511506 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCERG1  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblTCERG1 - 5q32 [CytoView hg19]  TCERG1 - 5q32 [CytoView hg38]
Mapping of homologs : NCBITCERG1 [Mapview hg19]  TCERG1 [Mapview hg38]
OMIM605409   
Gene and transcription
Genbank (Entrez)AB209910 AF017789 AK074511 AK126455 AK304319
RefSeq transcript (Entrez)NM_001040006 NM_006706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCERG1
Cluster EST : UnigeneHs.443465 [ NCBI ]
CGAP (NCI)Hs.443465
Alternative Splicing GalleryENSG00000113649
Gene ExpressionTCERG1 [ NCBI-GEO ]   TCERG1 [ EBI - ARRAY_EXPRESS ]   TCERG1 [ SEEK ]   TCERG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCERG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10915
GTEX Portal (Tissue expression)TCERG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14776   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14776  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14776
Splice isoforms : SwissVarO14776
PhosPhoSitePlusO14776
Domaine pattern : Prosite (Expaxy)FF (PS51676)    WW_DOMAIN_1 (PS01159)    WW_DOMAIN_2 (PS50020)   
Domains : Interpro (EBI)FF_domain    WW_dom   
Domain families : Pfam (Sanger)FF (PF01846)    WW (PF00397)   
Domain families : Pfam (NCBI)pfam01846    pfam00397   
Domain families : Smart (EMBL)FF (SM00441)  WW (SM00456)  
Conserved Domain (NCBI)TCERG1
DMDM Disease mutations10915
Blocks (Seattle)TCERG1
PDB (SRS)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
PDB (PDBSum)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
PDB (IMB)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
PDB (RSDB)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
Structural Biology KnowledgeBase2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
SCOP (Structural Classification of Proteins)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
CATH (Classification of proteins structures)2DK7    2DOD    2DOE    2DOF    2E71    2KIQ    2KIS    2MW9    2MWA    2MWB    2MWD    2MWE    2MWF    2N4R    2N4S    2N4T    2N4U    2N4V    2N4W    2NNT    3HFH    3Q1I    4FQG   
SuperfamilyO14776
Human Protein AtlasENSG00000113649
Peptide AtlasO14776
HPRD10393
IPIIPI00247871   IPI00744062   IPI01022399   
Protein Interaction databases
DIP (DOE-UCLA)O14776
IntAct (EBI)O14776
FunCoupENSG00000113649
BioGRIDTCERG1
STRING (EMBL)TCERG1
ZODIACTCERG1
Ontologies - Pathways
QuickGOO14776
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II repressing transcription factor binding  RNA polymerase II transcription corepressor activity  transcription coactivator activity  RNA binding  protein binding  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  proline-rich region binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II repressing transcription factor binding  RNA polymerase II transcription corepressor activity  transcription coactivator activity  RNA binding  protein binding  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  proline-rich region binding  
Pathways : KEGGSpliceosome   
NDEx NetworkTCERG1
Atlas of Cancer Signalling NetworkTCERG1
Wikipedia pathwaysTCERG1
Orthology - Evolution
OrthoDB10915
GeneTree (enSembl)ENSG00000113649
Phylogenetic Trees/Animal Genes : TreeFamTCERG1
HOVERGENO14776
HOGENOMO14776
Homologs : HomoloGeneTCERG1
Homology/Alignments : Family Browser (UCSC)TCERG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCERG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCERG1
dbVarTCERG1
ClinVarTCERG1
1000_GenomesTCERG1 
Exome Variant ServerTCERG1
ExAC (Exome Aggregation Consortium)TCERG1 (select the gene name)
Genetic variants : HAPMAP10915
Genomic Variants (DGV)TCERG1 [DGVbeta]
DECIPHERTCERG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCERG1 
Mutations
ICGC Data PortalTCERG1 
TCGA Data PortalTCERG1 
Broad Tumor PortalTCERG1
OASIS PortalTCERG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCERG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCERG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCERG1
DgiDB (Drug Gene Interaction Database)TCERG1
DoCM (Curated mutations)TCERG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCERG1 (select a term)
intoGenTCERG1
Cancer3DTCERG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605409   
Orphanet
MedgenTCERG1
Genetic Testing Registry TCERG1
NextProtO14776 [Medical]
TSGene10915
GENETestsTCERG1
Target ValidationTCERG1
Huge Navigator TCERG1 [HugePedia]
snp3D : Map Gene to Disease10915
BioCentury BCIQTCERG1
ClinGenTCERG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10915
Chemical/Pharm GKB GenePA38007
Clinical trialTCERG1
Miscellaneous
canSAR (ICR)TCERG1 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCERG1
EVEXTCERG1
GoPubMedTCERG1
iHOPTCERG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:08 CEST 2017

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