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TCERG1L (transcription elongation regulator 1 like)

Identity

Alias_namestranscription elongation regulator 1-like
Alias_symbol (synonym)FLJ38950
Other alias-
HGNC (Hugo) TCERG1L
LocusID (NCBI) 256536
Atlas_Id 74577
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 131092392 and ends at 131311721 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCERG1L   23533
Cards
Entrez_Gene (NCBI)TCERG1L  256536  transcription elongation regulator 1 like
Aliases
GeneCards (Weizmann)TCERG1L
Ensembl hg19 (Hinxton)ENSG00000176769 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176769 [Gene_View]  chr10:131092392-131311721 [Contig_View]  TCERG1L [Vega]
ICGC DataPortalENSG00000176769
TCGA cBioPortalTCERG1L
AceView (NCBI)TCERG1L
Genatlas (Paris)TCERG1L
WikiGenes256536
SOURCE (Princeton)TCERG1L
Genetics Home Reference (NIH)TCERG1L
Genomic and cartography
GoldenPath hg38 (UCSC)TCERG1L  -     chr10:131092392-131311721 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCERG1L  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblTCERG1L - 10q26.3 [CytoView hg19]  TCERG1L - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBITCERG1L [Mapview hg19]  TCERG1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096269 BC042951 BC093639 BC101535 BM689725
RefSeq transcript (Entrez)NM_174937
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCERG1L
Cluster EST : UnigeneHs.126575 [ NCBI ]
CGAP (NCI)Hs.126575
Alternative Splicing GalleryENSG00000176769
Gene ExpressionTCERG1L [ NCBI-GEO ]   TCERG1L [ EBI - ARRAY_EXPRESS ]   TCERG1L [ SEEK ]   TCERG1L [ MEM ]
Gene Expression Viewer (FireBrowse)TCERG1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256536
GTEX Portal (Tissue expression)TCERG1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWI1
Splice isoforms : SwissVarQ5VWI1
PhosPhoSitePlusQ5VWI1
Domaine pattern : Prosite (Expaxy)FF (PS51676)    WW_DOMAIN_1 (PS01159)    WW_DOMAIN_2 (PS50020)   
Domains : Interpro (EBI)FF_domain    WW_dom   
Domain families : Pfam (Sanger)FF (PF01846)   
Domain families : Pfam (NCBI)pfam01846   
Domain families : Smart (EMBL)FF (SM00441)  WW (SM00456)  
Conserved Domain (NCBI)TCERG1L
DMDM Disease mutations256536
Blocks (Seattle)TCERG1L
SuperfamilyQ5VWI1
Human Protein AtlasENSG00000176769
Peptide AtlasQ5VWI1
HPRD18170
IPIIPI00794939   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWI1
IntAct (EBI)Q5VWI1
FunCoupENSG00000176769
BioGRIDTCERG1L
STRING (EMBL)TCERG1L
ZODIACTCERG1L
Ontologies - Pathways
QuickGOQ5VWI1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTCERG1L
Atlas of Cancer Signalling NetworkTCERG1L
Wikipedia pathwaysTCERG1L
Orthology - Evolution
OrthoDB256536
GeneTree (enSembl)ENSG00000176769
Phylogenetic Trees/Animal Genes : TreeFamTCERG1L
HOVERGENQ5VWI1
HOGENOMQ5VWI1
Homologs : HomoloGeneTCERG1L
Homology/Alignments : Family Browser (UCSC)TCERG1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCERG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCERG1L
dbVarTCERG1L
ClinVarTCERG1L
1000_GenomesTCERG1L 
Exome Variant ServerTCERG1L
ExAC (Exome Aggregation Consortium)TCERG1L (select the gene name)
Genetic variants : HAPMAP256536
Genomic Variants (DGV)TCERG1L [DGVbeta]
DECIPHERTCERG1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCERG1L 
Mutations
ICGC Data PortalTCERG1L 
TCGA Data PortalTCERG1L 
Broad Tumor PortalTCERG1L
OASIS PortalTCERG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCERG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCERG1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCERG1L
DgiDB (Drug Gene Interaction Database)TCERG1L
DoCM (Curated mutations)TCERG1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCERG1L (select a term)
intoGenTCERG1L
Cancer3DTCERG1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCERG1L
Genetic Testing Registry TCERG1L
NextProtQ5VWI1 [Medical]
TSGene256536
GENETestsTCERG1L
Target ValidationTCERG1L
Huge Navigator TCERG1L [HugePedia]
snp3D : Map Gene to Disease256536
BioCentury BCIQTCERG1L
ClinGenTCERG1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256536
Chemical/Pharm GKB GenePA134864258
Clinical trialTCERG1L
Miscellaneous
canSAR (ICR)TCERG1L (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCERG1L
EVEXTCERG1L
GoPubMedTCERG1L
iHOPTCERG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:06 CEST 2017

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