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TCERG1L (transcription elongation regulator 1 like)

Identity

Alias (NCBI)-
HGNC (Hugo) TCERG1L
HGNC Alias symbFLJ38950
HGNC Previous nametranscription elongation regulator 1-like
LocusID (NCBI) 256536
Atlas_Id 74577
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 131092391 and ends at 131311721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCERG1L   23533
Cards
Entrez_Gene (NCBI)TCERG1L    transcription elongation regulator 1 like
Aliases
GeneCards (Weizmann)TCERG1L
Ensembl hg19 (Hinxton)ENSG00000176769 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176769 [Gene_View]  ENSG00000176769 [Sequence]  chr10:131092391-131311721 [Contig_View]  TCERG1L [Vega]
ICGC DataPortalENSG00000176769
TCGA cBioPortalTCERG1L
AceView (NCBI)TCERG1L
Genatlas (Paris)TCERG1L
SOURCE (Princeton)TCERG1L
Genetics Home Reference (NIH)TCERG1L
Genomic and cartography
GoldenPath hg38 (UCSC)TCERG1L  -     chr10:131092391-131311721 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCERG1L  -     10q26.3   [Description]    (hg19-Feb_2009)
GoldenPathTCERG1L - 10q26.3 [CytoView hg19]  TCERG1L - 10q26.3 [CytoView hg38]
ImmunoBaseENSG00000176769
Genome Data Viewer NCBITCERG1L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK096269 BC042951 BC093639 BC101535 BM689725
RefSeq transcript (Entrez)NM_174937
Consensus coding sequences : CCDS (NCBI)TCERG1L
Gene ExpressionTCERG1L [ NCBI-GEO ]   TCERG1L [ EBI - ARRAY_EXPRESS ]   TCERG1L [ SEEK ]   TCERG1L [ MEM ]
Gene Expression Viewer (FireBrowse)TCERG1L [ Firebrowse - Broad ]
GenevisibleExpression of TCERG1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256536
GTEX Portal (Tissue expression)TCERG1L
Human Protein AtlasENSG00000176769-TCERG1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWI1
PhosPhoSitePlusQ5VWI1
Domaine pattern : Prosite (Expaxy)FF (PS51676)    WW_DOMAIN_1 (PS01159)    WW_DOMAIN_2 (PS50020)   
Domains : Interpro (EBI)FF_domain    FF_domain_sf    WW_dom    WW_dom_sf   
Domain families : Pfam (Sanger)FF (PF01846)   
Domain families : Pfam (NCBI)pfam01846   
Domain families : Smart (EMBL)FF (SM00441)  WW (SM00456)  
Conserved Domain (NCBI)TCERG1L
SuperfamilyQ5VWI1
AlphaFold pdb e-kbQ5VWI1   
Human Protein Atlas [tissue]ENSG00000176769-TCERG1L [tissue]
HPRD18170
Protein Interaction databases
DIP (DOE-UCLA)Q5VWI1
IntAct (EBI)Q5VWI1
BioGRIDTCERG1L
STRING (EMBL)TCERG1L
ZODIACTCERG1L
Ontologies - Pathways
QuickGOQ5VWI1
Ontology : AmiGOtranscription coregulator activity  nucleus  regulation of transcription, DNA-templated  RNA polymerase binding  
Ontology : EGO-EBItranscription coregulator activity  nucleus  regulation of transcription, DNA-templated  RNA polymerase binding  
NDEx NetworkTCERG1L
Atlas of Cancer Signalling NetworkTCERG1L
Wikipedia pathwaysTCERG1L
Orthology - Evolution
OrthoDB256536
GeneTree (enSembl)ENSG00000176769
Phylogenetic Trees/Animal Genes : TreeFamTCERG1L
Homologs : HomoloGeneTCERG1L
Homology/Alignments : Family Browser (UCSC)TCERG1L
Gene fusions - Rearrangements
Fusion : QuiverTCERG1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCERG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCERG1L
dbVarTCERG1L
ClinVarTCERG1L
MonarchTCERG1L
1000_GenomesTCERG1L 
Exome Variant ServerTCERG1L
GNOMAD BrowserENSG00000176769
Varsome BrowserTCERG1L
ACMGTCERG1L variants
VarityQ5VWI1
Genomic Variants (DGV)TCERG1L [DGVbeta]
DECIPHERTCERG1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCERG1L 
Mutations
ICGC Data PortalTCERG1L 
TCGA Data PortalTCERG1L 
Broad Tumor PortalTCERG1L
OASIS PortalTCERG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCERG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCERG1L
Mutations and Diseases : HGMDTCERG1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCERG1L
DgiDB (Drug Gene Interaction Database)TCERG1L
DoCM (Curated mutations)TCERG1L
CIViC (Clinical Interpretations of Variants in Cancer)TCERG1L
Cancer3DTCERG1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCERG1L
MedgenTCERG1L
Genetic Testing Registry TCERG1L
NextProtQ5VWI1 [Medical]
GENETestsTCERG1L
Target ValidationTCERG1L
Huge Navigator TCERG1L [HugePedia]
ClinGenTCERG1L
Clinical trials, drugs, therapy
MyCancerGenomeTCERG1L
Protein Interactions : CTDTCERG1L
Pharm GKB GenePA134864258
PharosQ5VWI1
Clinical trialTCERG1L
Miscellaneous
canSAR (ICR)TCERG1L
HarmonizomeTCERG1L
DataMed IndexTCERG1L
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCERG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:04 CEST 2021

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