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TCF15 (transcription factor 15)

Identity

Alias_symbol (synonym)EC2
PARAXIS
bHLHa40
Other alias
HGNC (Hugo) TCF15
LocusID (NCBI) 6939
Atlas_Id 50541
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 603993 and ends at 610266 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCF15   11627
Cards
Entrez_Gene (NCBI)TCF15  6939  transcription factor 15
AliasesEC2; PARAXIS; bHLHa40
GeneCards (Weizmann)TCF15
Ensembl hg19 (Hinxton)ENSG00000125878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125878 [Gene_View]  chr20:603993-610266 [Contig_View]  TCF15 [Vega]
ICGC DataPortalENSG00000125878
TCGA cBioPortalTCF15
AceView (NCBI)TCF15
Genatlas (Paris)TCF15
WikiGenes6939
SOURCE (Princeton)TCF15
Genetics Home Reference (NIH)TCF15
Genomic and cartography
GoldenPath hg38 (UCSC)TCF15  -     chr20:603993-610266 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF15  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblTCF15 - 20p13 [CytoView hg19]  TCF15 - 20p13 [CytoView hg38]
Mapping of homologs : NCBITCF15 [Mapview hg19]  TCF15 [Mapview hg38]
OMIM601010   
Gene and transcription
Genbank (Entrez)AI218364 AW290965 BC067836 BC160039 U08336
RefSeq transcript (Entrez)NM_004609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCF15
Cluster EST : UnigeneHs.437 [ NCBI ]
CGAP (NCI)Hs.437
Alternative Splicing GalleryENSG00000125878
Gene ExpressionTCF15 [ NCBI-GEO ]   TCF15 [ EBI - ARRAY_EXPRESS ]   TCF15 [ SEEK ]   TCF15 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6939
GTEX Portal (Tissue expression)TCF15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12870   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12870  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12870
Splice isoforms : SwissVarQ12870
PhosPhoSitePlusQ12870
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)TCF15
DMDM Disease mutations6939
Blocks (Seattle)TCF15
SuperfamilyQ12870
Human Protein AtlasENSG00000125878
Peptide AtlasQ12870
HPRD03003
IPIIPI00010762   
Protein Interaction databases
DIP (DOE-UCLA)Q12870
IntAct (EBI)Q12870
FunCoupENSG00000125878
BioGRIDTCF15
STRING (EMBL)TCF15
ZODIACTCF15
Ontologies - Pathways
QuickGOQ12870
Ontology : AmiGOsomitogenesis  respiratory system process  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  mesoderm development  post-anal tail morphogenesis  eating behavior  ear development  skin development  establishment of epithelial cell apical/basal polarity  protein dimerization activity  paraxial mesoderm development  muscle organ morphogenesis  skeletal system morphogenesis  neuromuscular process controlling posture  mesenchymal to epithelial transition  regulation of extracellular matrix organization  
Ontology : EGO-EBIsomitogenesis  respiratory system process  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  mesoderm development  post-anal tail morphogenesis  eating behavior  ear development  skin development  establishment of epithelial cell apical/basal polarity  protein dimerization activity  paraxial mesoderm development  muscle organ morphogenesis  skeletal system morphogenesis  neuromuscular process controlling posture  mesenchymal to epithelial transition  regulation of extracellular matrix organization  
NDEx NetworkTCF15
Atlas of Cancer Signalling NetworkTCF15
Wikipedia pathwaysTCF15
Orthology - Evolution
OrthoDB6939
GeneTree (enSembl)ENSG00000125878
Phylogenetic Trees/Animal Genes : TreeFamTCF15
HOVERGENQ12870
HOGENOMQ12870
Homologs : HomoloGeneTCF15
Homology/Alignments : Family Browser (UCSC)TCF15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF15
dbVarTCF15
ClinVarTCF15
1000_GenomesTCF15 
Exome Variant ServerTCF15
ExAC (Exome Aggregation Consortium)TCF15 (select the gene name)
Genetic variants : HAPMAP6939
Genomic Variants (DGV)TCF15 [DGVbeta]
DECIPHERTCF15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF15 
Mutations
ICGC Data PortalTCF15 
TCGA Data PortalTCF15 
Broad Tumor PortalTCF15
OASIS PortalTCF15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCF15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCF15
DgiDB (Drug Gene Interaction Database)TCF15
DoCM (Curated mutations)TCF15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCF15 (select a term)
intoGenTCF15
Cancer3DTCF15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601010   
Orphanet
MedgenTCF15
Genetic Testing Registry TCF15
NextProtQ12870 [Medical]
TSGene6939
GENETestsTCF15
Target ValidationTCF15
Huge Navigator TCF15 [HugePedia]
snp3D : Map Gene to Disease6939
BioCentury BCIQTCF15
ClinGenTCF15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6939
Chemical/Pharm GKB GenePA36382
Clinical trialTCF15
Miscellaneous
canSAR (ICR)TCF15 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCF15
EVEXTCF15
GoPubMedTCF15
iHOPTCF15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:34:30 CEST 2017

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