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TCF19 (transcription factor 19)

Identity

Alias_symbol (synonym)SC1
Other aliasTCF-19
HGNC (Hugo) TCF19
LocusID (NCBI) 6941
Atlas_Id 56299
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31158526 and ends at 31164215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCF19   11629
Cards
Entrez_Gene (NCBI)TCF19  6941  transcription factor 19
AliasesSC1; TCF-19
GeneCards (Weizmann)TCF19
Ensembl hg19 (Hinxton)ENSG00000137310 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137310 [Gene_View]  ENSG00000137310 [Sequence]  chr6:31158526-31164215 [Contig_View]  TCF19 [Vega]
ICGC DataPortalENSG00000137310
TCGA cBioPortalTCF19
AceView (NCBI)TCF19
Genatlas (Paris)TCF19
WikiGenes6941
SOURCE (Princeton)TCF19
Genetics Home Reference (NIH)TCF19
Genomic and cartography
GoldenPath hg38 (UCSC)TCF19  -     chr6:31158526-31164215 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF19  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblTCF19 - 6p21.33 [CytoView hg19]  TCF19 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBITCF19 [Mapview hg19]  TCF19 [Mapview hg38]
OMIM600912   
Gene and transcription
Genbank (Entrez)AK056834 AK315258 BC002493 BC033086 BC044632
RefSeq transcript (Entrez)NM_001077511 NM_001318908 NM_007109
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)TCF19
Cluster EST : UnigeneHs.584807 [ NCBI ]
CGAP (NCI)Hs.584807
Alternative Splicing GalleryENSG00000137310
Gene ExpressionTCF19 [ NCBI-GEO ]   TCF19 [ EBI - ARRAY_EXPRESS ]   TCF19 [ SEEK ]   TCF19 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6941
GTEX Portal (Tissue expression)TCF19
Human Protein AtlasENSG00000137310-TCF19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y242   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y242  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y242
Splice isoforms : SwissVarQ9Y242
PhosPhoSitePlusQ9Y242
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)    ZF_PHD_1 (PS01359)   
Domains : Interpro (EBI)FHA_dom    SMAD_FHA_dom_sf    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Domain families : Smart (EMBL)FHA (SM00240)  PHD (SM00249)  
Conserved Domain (NCBI)TCF19
DMDM Disease mutations6941
Blocks (Seattle)TCF19
SuperfamilyQ9Y242
Human Protein Atlas [tissue]ENSG00000137310-TCF19 [tissue]
Peptide AtlasQ9Y242
HPRD15986
IPIIPI00873279   IPI00827895   IPI01013818   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y242
IntAct (EBI)Q9Y242
FunCoupENSG00000137310
BioGRIDTCF19
STRING (EMBL)TCF19
ZODIACTCF19
Ontologies - Pathways
QuickGOQ9Y242
Ontology : AmiGODNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription by RNA polymerase II  cell proliferation  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription by RNA polymerase II  cell proliferation  metal ion binding  
NDEx NetworkTCF19
Atlas of Cancer Signalling NetworkTCF19
Wikipedia pathwaysTCF19
Orthology - Evolution
OrthoDB6941
GeneTree (enSembl)ENSG00000137310
Phylogenetic Trees/Animal Genes : TreeFamTCF19
HOVERGENQ9Y242
HOGENOMQ9Y242
Homologs : HomoloGeneTCF19
Homology/Alignments : Family Browser (UCSC)TCF19
Gene fusions - Rearrangements
Fusion : QuiverTCF19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF19
dbVarTCF19
ClinVarTCF19
1000_GenomesTCF19 
Exome Variant ServerTCF19
ExAC (Exome Aggregation Consortium)ENSG00000137310
GNOMAD BrowserENSG00000137310
Varsome BrowserTCF19
Genetic variants : HAPMAP6941
Genomic Variants (DGV)TCF19 [DGVbeta]
DECIPHERTCF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF19 
Mutations
ICGC Data PortalTCF19 
TCGA Data PortalTCF19 
Broad Tumor PortalTCF19
OASIS PortalTCF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCF19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCF19
DgiDB (Drug Gene Interaction Database)TCF19
DoCM (Curated mutations)TCF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCF19 (select a term)
intoGenTCF19
Cancer3DTCF19(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600912   
Orphanet
DisGeNETTCF19
MedgenTCF19
Genetic Testing Registry TCF19
NextProtQ9Y242 [Medical]
TSGene6941
GENETestsTCF19
Target ValidationTCF19
Huge Navigator TCF19 [HugePedia]
snp3D : Map Gene to Disease6941
BioCentury BCIQTCF19
ClinGenTCF19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6941
Chemical/Pharm GKB GenePA36384
Clinical trialTCF19
Miscellaneous
canSAR (ICR)TCF19 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCF19
EVEXTCF19
GoPubMedTCF19
iHOPTCF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:44:12 CET 2018

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