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TCF20 (transcription factor 20)

Identity

Alias (NCBI)AR1
DDVIBA
SPBP
TCF-20
HGNC (Hugo) TCF20
HGNC Alias symbAR1
SPBP
HGNC Alias namestromelysin-1 platelet-derived growth factor-responsive element binding protein
HGNC Previous nametranscription factor 20 (AR1)
LocusID (NCBI) 6942
Atlas_Id 54694
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42160013 and ends at 42215341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NF2 (22q12.2) / TCF20 (22q13.2)TCF20 (22q13.2) / MKL1 (22q13.1)TCF20 (22q13.2) / NF2 (22q12.2)
TCF20 (22q13.2) / TCF20 (22q13.2)TCF20 (22q13.2) / TM2D2 (8p11.22)UCP2 (11q13.4) / TCF20 (22q13.2)
TCF20 22q13.2 / MKL1 22q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCF20   11631
LRG (Locus Reference Genomic)LRG_1025
Cards
Entrez_Gene (NCBI)TCF20    transcription factor 20
AliasesAR1; DDVIBA; SPBP; TCF-20
GeneCards (Weizmann)TCF20
Ensembl hg19 (Hinxton)ENSG00000100207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100207 [Gene_View]  ENSG00000100207 [Sequence]  chr22:42160013-42215341 [Contig_View]  TCF20 [Vega]
ICGC DataPortalENSG00000100207
TCGA cBioPortalTCF20
AceView (NCBI)TCF20
Genatlas (Paris)TCF20
SOURCE (Princeton)TCF20
Genetics Home Reference (NIH)TCF20
Genomic and cartography
GoldenPath hg38 (UCSC)TCF20  -     chr22:42160013-42215341 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF20  -     22q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTCF20 - 22q13.2 [CytoView hg19]  TCF20 - 22q13.2 [CytoView hg38]
ImmunoBaseENSG00000100207
Genome Data Viewer NCBITCF20 [Mapview hg19]  
OMIM603107   618430   
Gene and transcription
Genbank (Entrez)AB006630 BC013180 BU732753 KF851355 U19345
RefSeq transcript (Entrez)NM_001378418 NM_005650 NM_181492
Consensus coding sequences : CCDS (NCBI)TCF20
Gene ExpressionTCF20 [ NCBI-GEO ]   TCF20 [ EBI - ARRAY_EXPRESS ]   TCF20 [ SEEK ]   TCF20 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF20 [ Firebrowse - Broad ]
GenevisibleExpression of TCF20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6942
GTEX Portal (Tissue expression)TCF20
Human Protein AtlasENSG00000100207-TCF20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGU0
PhosPhoSitePlusQ9UGU0
Domaine pattern : Prosite (Expaxy)EPHD (PS51805)   
Domains : Interpro (EBI)EPHD    TCF-20_ePHD    Znf_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)TCF20
SuperfamilyQ9UGU0
AlphaFold pdb e-kbQ9UGU0   
Human Protein Atlas [tissue]ENSG00000100207-TCF20 [tissue]
HPRD04378
Protein Interaction databases
DIP (DOE-UCLA)Q9UGU0
IntAct (EBI)Q9UGU0
BioGRIDTCF20
STRING (EMBL)TCF20
ZODIACTCF20
Ontologies - Pathways
QuickGOQ9UGU0
Ontology : AmiGODNA binding  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  nuclear body  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA binding  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  nuclear body  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkTCF20
Atlas of Cancer Signalling NetworkTCF20
Wikipedia pathwaysTCF20
Orthology - Evolution
OrthoDB6942
GeneTree (enSembl)ENSG00000100207
Phylogenetic Trees/Animal Genes : TreeFamTCF20
Homologs : HomoloGeneTCF20
Homology/Alignments : Family Browser (UCSC)TCF20
Gene fusions - Rearrangements
Fusion : MitelmanNF2/TCF20 [22q12.2/22q13.2]  
Fusion : MitelmanTCF20/MKL1 [22q13.2/22q13.1]  
Fusion : MitelmanTCF20/NF2 [22q13.2/22q12.2]  
Fusion : QuiverTCF20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF20
dbVarTCF20
ClinVarTCF20
MonarchTCF20
1000_GenomesTCF20 
Exome Variant ServerTCF20
GNOMAD BrowserENSG00000100207
Varsome BrowserTCF20
ACMGTCF20 variants
VarityQ9UGU0
Genomic Variants (DGV)TCF20 [DGVbeta]
DECIPHERTCF20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF20 
Mutations
ICGC Data PortalTCF20 
TCGA Data PortalTCF20 
Broad Tumor PortalTCF20
OASIS PortalTCF20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCF20
Mutations and Diseases : HGMDTCF20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCF20
DgiDB (Drug Gene Interaction Database)TCF20
DoCM (Curated mutations)TCF20
CIViC (Clinical Interpretations of Variants in Cancer)TCF20
Cancer3DTCF20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603107    618430   
Orphanet
DisGeNETTCF20
MedgenTCF20
Genetic Testing Registry TCF20
NextProtQ9UGU0 [Medical]
GENETestsTCF20
Target ValidationTCF20
Huge Navigator TCF20 [HugePedia]
ClinGenTCF20
Clinical trials, drugs, therapy
MyCancerGenomeTCF20
Protein Interactions : CTDTCF20
Pharm GKB GenePA36386
PharosQ9UGU0
Clinical trialTCF20
Miscellaneous
canSAR (ICR)TCF20
HarmonizomeTCF20
DataMed IndexTCF20
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:34 CEST 2021

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