Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCF23 (transcription factor 23)

Identity

Alias_symbol (synonym)OUT
bHLHa24
Other aliasTCF-23
HGNC (Hugo) TCF23
LocusID (NCBI) 150921
Atlas_Id 74580
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27149077 and ends at 27152951 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCF23   18602
Cards
Entrez_Gene (NCBI)TCF23  150921  transcription factor 23
AliasesOUT; TCF-23; bHLHa24
GeneCards (Weizmann)TCF23
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:27149077-27152951 [Contig_View]  TCF23 [Vega]
TCGA cBioPortalTCF23
AceView (NCBI)TCF23
Genatlas (Paris)TCF23
WikiGenes150921
SOURCE (Princeton)TCF23
Genetics Home Reference (NIH)TCF23
Genomic and cartography
GoldenPath hg38 (UCSC)TCF23  -     chr2:27149077-27152951 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF23  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblTCF23 - 2p23.3 [CytoView hg19]  TCF23 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBITCF23 [Mapview hg19]  TCF23 [Mapview hg38]
OMIM609635   
Gene and transcription
Genbank (Entrez)BC137191 BC137192 BC144525
RefSeq transcript (Entrez)NM_175769
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCF23
Cluster EST : UnigeneHs.591583 [ NCBI ]
CGAP (NCI)Hs.591583
Gene ExpressionTCF23 [ NCBI-GEO ]   TCF23 [ EBI - ARRAY_EXPRESS ]   TCF23 [ SEEK ]   TCF23 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150921
GTEX Portal (Tissue expression)TCF23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTU1
Splice isoforms : SwissVarQ7RTU1
PhosPhoSitePlusQ7RTU1
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)TCF23
DMDM Disease mutations150921
Blocks (Seattle)TCF23
SuperfamilyQ7RTU1
Peptide AtlasQ7RTU1
HPRD18734
IPIIPI00394924   IPI00894094   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTU1
IntAct (EBI)Q7RTU1
BioGRIDTCF23
STRING (EMBL)TCF23
ZODIACTCF23
Ontologies - Pathways
QuickGOQ7RTU1
Ontology : AmiGOnucleus  muscle organ development  cell differentiation  protein dimerization activity  
Ontology : EGO-EBInucleus  muscle organ development  cell differentiation  protein dimerization activity  
NDEx NetworkTCF23
Atlas of Cancer Signalling NetworkTCF23
Wikipedia pathwaysTCF23
Orthology - Evolution
OrthoDB150921
Phylogenetic Trees/Animal Genes : TreeFamTCF23
HOVERGENQ7RTU1
HOGENOMQ7RTU1
Homologs : HomoloGeneTCF23
Homology/Alignments : Family Browser (UCSC)TCF23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF23
dbVarTCF23
ClinVarTCF23
1000_GenomesTCF23 
Exome Variant ServerTCF23
ExAC (Exome Aggregation Consortium)TCF23 (select the gene name)
Genetic variants : HAPMAP150921
Genomic Variants (DGV)TCF23 [DGVbeta]
DECIPHERTCF23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF23 
Mutations
ICGC Data PortalTCF23 
TCGA Data PortalTCF23 
Broad Tumor PortalTCF23
OASIS PortalTCF23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCF23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCF23
DgiDB (Drug Gene Interaction Database)TCF23
DoCM (Curated mutations)TCF23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCF23 (select a term)
intoGenTCF23
Cancer3DTCF23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609635   
Orphanet
MedgenTCF23
Genetic Testing Registry TCF23
NextProtQ7RTU1 [Medical]
TSGene150921
GENETestsTCF23
Target ValidationTCF23
Huge Navigator TCF23 [HugePedia]
snp3D : Map Gene to Disease150921
BioCentury BCIQTCF23
ClinGenTCF23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150921
Chemical/Pharm GKB GenePA38359
Clinical trialTCF23
Miscellaneous
canSAR (ICR)TCF23 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCF23
EVEXTCF23
GoPubMedTCF23
iHOPTCF23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:08 CEST 2017

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