Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCF23 (transcription factor 23)

Identity

Alias (NCBI)OUT
TCF-23
bHLHa24
HGNC (Hugo) TCF23
HGNC Alias symbOUT
bHLHa24
LocusID (NCBI) 150921
Atlas_Id 74580
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27149004 and ends at 27156974 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCF23   18602
Cards
Entrez_Gene (NCBI)TCF23    transcription factor 23
AliasesOUT; TCF-23; bHLHa24
GeneCards (Weizmann)TCF23
Ensembl hg19 (Hinxton)ENSG00000163792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163792 [Gene_View]  ENSG00000163792 [Sequence]  chr2:27149004-27156974 [Contig_View]  TCF23 [Vega]
ICGC DataPortalENSG00000163792
TCGA cBioPortalTCF23
AceView (NCBI)TCF23
Genatlas (Paris)TCF23
SOURCE (Princeton)TCF23
Genetics Home Reference (NIH)TCF23
Genomic and cartography
GoldenPath hg38 (UCSC)TCF23  -     chr2:27149004-27156974 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF23  -     2p23.3   [Description]    (hg19-Feb_2009)
GoldenPathTCF23 - 2p23.3 [CytoView hg19]  TCF23 - 2p23.3 [CytoView hg38]
ImmunoBaseENSG00000163792
Genome Data Viewer NCBITCF23 [Mapview hg19]  
OMIM609635   
Gene and transcription
Genbank (Entrez)BC137191 BC137192 BC144525
RefSeq transcript (Entrez)NM_175769
Consensus coding sequences : CCDS (NCBI)TCF23
Gene ExpressionTCF23 [ NCBI-GEO ]   TCF23 [ EBI - ARRAY_EXPRESS ]   TCF23 [ SEEK ]   TCF23 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF23 [ Firebrowse - Broad ]
GenevisibleExpression of TCF23 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150921
GTEX Portal (Tissue expression)TCF23
Human Protein AtlasENSG00000163792-TCF23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTU1
PhosPhoSitePlusQ7RTU1
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom    HLH_DNA-bd_sf   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)TCF23
SuperfamilyQ7RTU1
AlphaFold pdb e-kbQ7RTU1   
Human Protein Atlas [tissue]ENSG00000163792-TCF23 [tissue]
HPRD18734
Protein Interaction databases
DIP (DOE-UCLA)Q7RTU1
IntAct (EBI)Q7RTU1
BioGRIDTCF23
STRING (EMBL)TCF23
ZODIACTCF23
Ontologies - Pathways
QuickGOQ7RTU1
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  chromatin  euchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  muscle organ development  positive regulation of gene expression  cell differentiation  developmental process  decidualization  protein dimerization activity  negative regulation of muscle cell differentiation  RNA polymerase II-specific DNA-binding transcription factor binding  transcription regulator inhibitor activity  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  chromatin  euchromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  muscle organ development  positive regulation of gene expression  cell differentiation  developmental process  decidualization  protein dimerization activity  negative regulation of muscle cell differentiation  RNA polymerase II-specific DNA-binding transcription factor binding  transcription regulator inhibitor activity  
NDEx NetworkTCF23
Atlas of Cancer Signalling NetworkTCF23
Wikipedia pathwaysTCF23
Orthology - Evolution
OrthoDB150921
GeneTree (enSembl)ENSG00000163792
Phylogenetic Trees/Animal Genes : TreeFamTCF23
Homologs : HomoloGeneTCF23
Homology/Alignments : Family Browser (UCSC)TCF23
Gene fusions - Rearrangements
Fusion : QuiverTCF23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF23
dbVarTCF23
ClinVarTCF23
MonarchTCF23
1000_GenomesTCF23 
Exome Variant ServerTCF23
GNOMAD BrowserENSG00000163792
Varsome BrowserTCF23
ACMGTCF23 variants
VarityQ7RTU1
Genomic Variants (DGV)TCF23 [DGVbeta]
DECIPHERTCF23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF23 
Mutations
ICGC Data PortalTCF23 
TCGA Data PortalTCF23 
Broad Tumor PortalTCF23
OASIS PortalTCF23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF23  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCF23
Mutations and Diseases : HGMDTCF23
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCF23
DgiDB (Drug Gene Interaction Database)TCF23
DoCM (Curated mutations)TCF23
CIViC (Clinical Interpretations of Variants in Cancer)TCF23
Cancer3DTCF23
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609635   
Orphanet
DisGeNETTCF23
MedgenTCF23
Genetic Testing Registry TCF23
NextProtQ7RTU1 [Medical]
GENETestsTCF23
Target ValidationTCF23
Huge Navigator TCF23 [HugePedia]
ClinGenTCF23
Clinical trials, drugs, therapy
MyCancerGenomeTCF23
Protein Interactions : CTDTCF23
Pharm GKB GenePA38359
PharosQ7RTU1
Clinical trialTCF23
Miscellaneous
canSAR (ICR)TCF23
HarmonizomeTCF23
DataMed IndexTCF23
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCF23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:04 CEST 2021

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