Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCF24 (transcription factor 24)

Identity

Alias (NCBI)TCF-24
bHLHa25
HGNC (Hugo) TCF24
HGNC Alias symbbHLHa25
LocusID (NCBI) 100129654
Atlas_Id 74581
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66946501 and ends at 66962591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCF24   32275
Cards
Entrez_Gene (NCBI)TCF24    transcription factor 24
AliasesTCF-24; bHLHa25
GeneCards (Weizmann)TCF24
Ensembl hg19 (Hinxton)ENSG00000261787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261787 [Gene_View]  ENSG00000261787 [Sequence]  chr8:66946501-66962591 [Contig_View]  TCF24 [Vega]
ICGC DataPortalENSG00000261787
TCGA cBioPortalTCF24
AceView (NCBI)TCF24
Genatlas (Paris)TCF24
SOURCE (Princeton)TCF24
Genetics Home Reference (NIH)TCF24
Genomic and cartography
GoldenPath hg38 (UCSC)TCF24  -     chr8:66946501-66962591 -  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF24  -     8q13.1   [Description]    (hg19-Feb_2009)
GoldenPathTCF24 - 8q13.1 [CytoView hg19]  TCF24 - 8q13.1 [CytoView hg38]
ImmunoBaseENSG00000261787
Genome Data Viewer NCBITCF24 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AW028708 CX788264
RefSeq transcript (Entrez)NM_001193502
Consensus coding sequences : CCDS (NCBI)TCF24
Gene ExpressionTCF24 [ NCBI-GEO ]   TCF24 [ EBI - ARRAY_EXPRESS ]   TCF24 [ SEEK ]   TCF24 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF24 [ Firebrowse - Broad ]
GenevisibleExpression of TCF24 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129654
GTEX Portal (Tissue expression)TCF24
Human Protein AtlasENSG00000261787-TCF24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTU0
PhosPhoSitePlusQ7RTU0
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom    HLH_DNA-bd_sf   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)TCF24
SuperfamilyQ7RTU0
AlphaFold pdb e-kbQ7RTU0   
Human Protein Atlas [tissue]ENSG00000261787-TCF24 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q7RTU0
IntAct (EBI)Q7RTU0
BioGRIDTCF24
STRING (EMBL)TCF24
ZODIACTCF24
Ontologies - Pathways
QuickGOQ7RTU0
Ontology : AmiGORNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  developmental process  protein dimerization activity  
Ontology : EGO-EBIRNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  developmental process  protein dimerization activity  
NDEx NetworkTCF24
Atlas of Cancer Signalling NetworkTCF24
Wikipedia pathwaysTCF24
Orthology - Evolution
OrthoDB100129654
GeneTree (enSembl)ENSG00000261787
Phylogenetic Trees/Animal Genes : TreeFamTCF24
Homologs : HomoloGeneTCF24
Homology/Alignments : Family Browser (UCSC)TCF24
Gene fusions - Rearrangements
Fusion : QuiverTCF24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF24
dbVarTCF24
ClinVarTCF24
MonarchTCF24
1000_GenomesTCF24 
Exome Variant ServerTCF24
GNOMAD BrowserENSG00000261787
Varsome BrowserTCF24
ACMGTCF24 variants
VarityQ7RTU0
Genomic Variants (DGV)TCF24 [DGVbeta]
DECIPHERTCF24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF24 
Mutations
ICGC Data PortalTCF24 
TCGA Data PortalTCF24 
Broad Tumor PortalTCF24
OASIS PortalTCF24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF24  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCF24
Mutations and Diseases : HGMDTCF24
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCF24
DgiDB (Drug Gene Interaction Database)TCF24
DoCM (Curated mutations)TCF24
CIViC (Clinical Interpretations of Variants in Cancer)TCF24
Cancer3DTCF24
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCF24
MedgenTCF24
Genetic Testing Registry TCF24
NextProtQ7RTU0 [Medical]
GENETestsTCF24
Target ValidationTCF24
Huge Navigator TCF24 [HugePedia]
ClinGenTCF24
Clinical trials, drugs, therapy
MyCancerGenomeTCF24
Protein Interactions : CTDTCF24
Pharm GKB GenePA142670826
PharosQ7RTU0
Clinical trialTCF24
Miscellaneous
canSAR (ICR)TCF24
HarmonizomeTCF24
DataMed IndexTCF24
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCF24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:04 CEST 2021

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