Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCF24 (transcription factor 24)

Identity

Alias_symbol (synonym)bHLHa25
Other aliasTCF-24
HGNC (Hugo) TCF24
LocusID (NCBI) 100129654
Atlas_Id 74581
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66946501 and ends at 66962590 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCF24   32275
Cards
Entrez_Gene (NCBI)TCF24  100129654  transcription factor 24
AliasesTCF-24; bHLHa25
GeneCards (Weizmann)TCF24
Ensembl hg19 (Hinxton)ENSG00000261787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261787 [Gene_View]  chr8:66946501-66962590 [Contig_View]  TCF24 [Vega]
ICGC DataPortalENSG00000261787
TCGA cBioPortalTCF24
AceView (NCBI)TCF24
Genatlas (Paris)TCF24
WikiGenes100129654
SOURCE (Princeton)TCF24
Genetics Home Reference (NIH)TCF24
Genomic and cartography
GoldenPath hg38 (UCSC)TCF24  -     chr8:66946501-66962590 -  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF24  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblTCF24 - 8q13.1 [CytoView hg19]  TCF24 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBITCF24 [Mapview hg19]  TCF24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW028708 CX788264
RefSeq transcript (Entrez)NM_001193502
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCF24
Cluster EST : UnigeneHs.120040 [ NCBI ]
CGAP (NCI)Hs.120040
Alternative Splicing GalleryENSG00000261787
Gene ExpressionTCF24 [ NCBI-GEO ]   TCF24 [ EBI - ARRAY_EXPRESS ]   TCF24 [ SEEK ]   TCF24 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129654
GTEX Portal (Tissue expression)TCF24
Human Protein AtlasENSG00000261787-TCF24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTU0
Splice isoforms : SwissVarQ7RTU0
PhosPhoSitePlusQ7RTU0
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)TCF24
DMDM Disease mutations100129654
Blocks (Seattle)TCF24
SuperfamilyQ7RTU0
Human Protein Atlas [tissue]ENSG00000261787-TCF24 [tissue]
Peptide AtlasQ7RTU0
IPIIPI00887130   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTU0
IntAct (EBI)Q7RTU0
FunCoupENSG00000261787
BioGRIDTCF24
STRING (EMBL)TCF24
ZODIACTCF24
Ontologies - Pathways
QuickGOQ7RTU0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  protein dimerization activity  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  protein dimerization activity  
NDEx NetworkTCF24
Atlas of Cancer Signalling NetworkTCF24
Wikipedia pathwaysTCF24
Orthology - Evolution
OrthoDB100129654
GeneTree (enSembl)ENSG00000261787
Phylogenetic Trees/Animal Genes : TreeFamTCF24
HOVERGENQ7RTU0
HOGENOMQ7RTU0
Homologs : HomoloGeneTCF24
Homology/Alignments : Family Browser (UCSC)TCF24
Gene fusions - Rearrangements
Fusion: Tumor Portal TCF24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF24
dbVarTCF24
ClinVarTCF24
1000_GenomesTCF24 
Exome Variant ServerTCF24
ExAC (Exome Aggregation Consortium)ENSG00000261787
GNOMAD BrowserENSG00000261787
Genetic variants : HAPMAP100129654
Genomic Variants (DGV)TCF24 [DGVbeta]
DECIPHERTCF24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF24 
Mutations
ICGC Data PortalTCF24 
TCGA Data PortalTCF24 
Broad Tumor PortalTCF24
OASIS PortalTCF24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCF24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCF24
DgiDB (Drug Gene Interaction Database)TCF24
DoCM (Curated mutations)TCF24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCF24 (select a term)
intoGenTCF24
Cancer3DTCF24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCF24
Genetic Testing Registry TCF24
NextProtQ7RTU0 [Medical]
TSGene100129654
GENETestsTCF24
Target ValidationTCF24
Huge Navigator TCF24 [HugePedia]
snp3D : Map Gene to Disease100129654
BioCentury BCIQTCF24
ClinGenTCF24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129654
Chemical/Pharm GKB GenePA142670826
Clinical trialTCF24
Miscellaneous
canSAR (ICR)TCF24 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCF24
EVEXTCF24
GoPubMedTCF24
iHOPTCF24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:31:57 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.