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TCF25 (transcription factor 25)

Identity

Alias_namestranscription factor 25 (basic helix-loop-helix)
Alias_symbol (synonym)Nulp1
KIAA1049
Other aliasFKSG26
Hulp1
NULP1
PRO2620
hKIAA1049
HGNC (Hugo) TCF25
LocusID (NCBI) 22980
Atlas_Id 50020
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89939994 and ends at 89977792 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COL1A1 (17q21.33) / TCF25 (16q24.3)CRYL1 (13q12.11) / TCF25 (16q24.3)GABRP (5q35.1) / TCF25 (16q24.3)
TCF25 (16q24.3) / MC1R (16q24.3)TCF25 (16q24.3) / MT1A (16q12.2)TCF25 (16q24.3) / SPIRE2 (16q24.3)
TCF25 (16q24.3) / TCF25 (16q24.3)TCF25 16q24.3 / SPIRE2 16q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCF25   29181
Cards
Entrez_Gene (NCBI)TCF25  22980  transcription factor 25
AliasesFKSG26; Hulp1; NULP1; PRO2620; 
hKIAA1049
GeneCards (Weizmann)TCF25
Ensembl hg19 (Hinxton)ENSG00000141002 [Gene_View]  chr16:89939994-89977792 [Contig_View]  TCF25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141002 [Gene_View]  chr16:89939994-89977792 [Contig_View]  TCF25 [Vega]
ICGC DataPortalENSG00000141002
TCGA cBioPortalTCF25
AceView (NCBI)TCF25
Genatlas (Paris)TCF25
WikiGenes22980
SOURCE (Princeton)TCF25
Genetics Home Reference (NIH)TCF25
Genomic and cartography
GoldenPath hg19 (UCSC)TCF25  -     chr16:89939994-89977792 +  16q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCF25  -     16q24.3   [Description]    (hg38-Dec_2013)
EnsemblTCF25 - 16q24.3 [CytoView hg19]  TCF25 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBITCF25 [Mapview hg19]  TCF25 [Mapview hg38]
OMIM612326   
Gene and transcription
Genbank (Entrez)AB028972 AF130092 AF322111 AK024679 AK095785
RefSeq transcript (Entrez)NM_014972
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929403
Consensus coding sequences : CCDS (NCBI)TCF25
Cluster EST : UnigeneHs.415342 [ NCBI ]
CGAP (NCI)Hs.415342
Alternative Splicing GalleryENSG00000141002
Gene ExpressionTCF25 [ NCBI-GEO ]   TCF25 [ EBI - ARRAY_EXPRESS ]   TCF25 [ SEEK ]   TCF25 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22980
GTEX Portal (Tissue expression)TCF25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ70
Splice isoforms : SwissVarQ9BQ70
PhosPhoSitePlusQ9BQ70
Domains : Interpro (EBI)TCF25    TPR-like_helical_dom   
Domain families : Pfam (Sanger)Tcf25 (PF04910)   
Domain families : Pfam (NCBI)pfam04910   
Conserved Domain (NCBI)TCF25
DMDM Disease mutations22980
Blocks (Seattle)TCF25
SuperfamilyQ9BQ70
Human Protein AtlasENSG00000141002
Peptide AtlasQ9BQ70
HPRD13830
IPIIPI00007320   IPI00023205   IPI00165075   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ70
IntAct (EBI)Q9BQ70
FunCoupENSG00000141002
BioGRIDTCF25
STRING (EMBL)TCF25
ZODIACTCF25
Ontologies - Pathways
QuickGOQ9BQ70
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  heart development  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  heart development  
NDEx NetworkTCF25
Atlas of Cancer Signalling NetworkTCF25
Wikipedia pathwaysTCF25
Orthology - Evolution
OrthoDB22980
GeneTree (enSembl)ENSG00000141002
Phylogenetic Trees/Animal Genes : TreeFamTCF25
HOVERGENQ9BQ70
HOGENOMQ9BQ70
Homologs : HomoloGeneTCF25
Homology/Alignments : Family Browser (UCSC)TCF25
Gene fusions - Rearrangements
Fusion : MitelmanTCF25/SPIRE2 [16q24.3/16q24.3]  
Fusion: TCGATCF25 16q24.3 SPIRE2 16q24.3 BRCA LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF25
dbVarTCF25
ClinVarTCF25
1000_GenomesTCF25 
Exome Variant ServerTCF25
ExAC (Exome Aggregation Consortium)TCF25 (select the gene name)
Genetic variants : HAPMAP22980
Genomic Variants (DGV)TCF25 [DGVbeta]
DECIPHER (Syndromes)16:89939994-89977792  ENSG00000141002
CONAN: Copy Number AnalysisTCF25 
Mutations
ICGC Data PortalTCF25 
TCGA Data PortalTCF25 
Broad Tumor PortalTCF25
OASIS PortalTCF25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCF25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCF25
DgiDB (Drug Gene Interaction Database)TCF25
DoCM (Curated mutations)TCF25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCF25 (select a term)
intoGenTCF25
Cancer3DTCF25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612326   
Orphanet
MedgenTCF25
Genetic Testing Registry TCF25
NextProtQ9BQ70 [Medical]
TSGene22980
GENETestsTCF25
Huge Navigator TCF25 [HugePedia]
snp3D : Map Gene to Disease22980
BioCentury BCIQTCF25
ClinGenTCF25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22980
Chemical/Pharm GKB GenePA145007492
Clinical trialTCF25
Miscellaneous
canSAR (ICR)TCF25 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCF25
EVEXTCF25
GoPubMedTCF25
iHOPTCF25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:02 CEST 2017

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