Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCF25 (transcription factor 25)

Identity

Alias (NCBI)FKSG26
Hulp1
NULP1
PRO2620
hKIAA1049
HGNC (Hugo) TCF25
HGNC Alias symbNulp1
KIAA1049
HGNC Previous nametranscription factor 25 (basic helix-loop-helix)
LocusID (NCBI) 22980
Atlas_Id 50020
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89873592 and ends at 89911379 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL1A1 (17q21.33) / TCF25 (16q24.3)CRYL1 (13q12.11) / TCF25 (16q24.3)GABRP (5q35.1) / TCF25 (16q24.3)
TCF25 (16q24.3) / MC1R (16q24.3)TCF25 (16q24.3) / MT1A (16q12.2)TCF25 (16q24.3) / SPIRE2 (16q24.3)
TCF25 (16q24.3) / TCF25 (16q24.3)TCF25 16q24.3 / SPIRE2 16q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCF25   29181
Cards
Entrez_Gene (NCBI)TCF25    transcription factor 25
AliasesFKSG26; Hulp1; NULP1; PRO2620; 
hKIAA1049
GeneCards (Weizmann)TCF25
Ensembl hg19 (Hinxton)ENSG00000141002 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141002 [Gene_View]  ENSG00000141002 [Sequence]  chr16:89873592-89911379 [Contig_View]  TCF25 [Vega]
ICGC DataPortalENSG00000141002
TCGA cBioPortalTCF25
AceView (NCBI)TCF25
Genatlas (Paris)TCF25
SOURCE (Princeton)TCF25
Genetics Home Reference (NIH)TCF25
Genomic and cartography
GoldenPath hg38 (UCSC)TCF25  -     chr16:89873592-89911379 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF25  -     16q24.3   [Description]    (hg19-Feb_2009)
GoldenPathTCF25 - 16q24.3 [CytoView hg19]  TCF25 - 16q24.3 [CytoView hg38]
ImmunoBaseENSG00000141002
Genome Data Viewer NCBITCF25 [Mapview hg19]  
OMIM612326   
Gene and transcription
Genbank (Entrez)AB028972 AF130092 AF322111 AK024679 AK095785
RefSeq transcript (Entrez)NM_014972
Consensus coding sequences : CCDS (NCBI)TCF25
Gene ExpressionTCF25 [ NCBI-GEO ]   TCF25 [ EBI - ARRAY_EXPRESS ]   TCF25 [ SEEK ]   TCF25 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF25 [ Firebrowse - Broad ]
GenevisibleExpression of TCF25 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22980
GTEX Portal (Tissue expression)TCF25
Human Protein AtlasENSG00000141002-TCF25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ70
PhosPhoSitePlusQ9BQ70
Domains : Interpro (EBI)TCF25/Rqc1    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)Tcf25 (PF04910)   
Domain families : Pfam (NCBI)pfam04910   
Conserved Domain (NCBI)TCF25
SuperfamilyQ9BQ70
AlphaFold pdb e-kbQ9BQ70   
Human Protein Atlas [tissue]ENSG00000141002-TCF25 [tissue]
HPRD13830
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ70
IntAct (EBI)Q9BQ70
BioGRIDTCF25
STRING (EMBL)TCF25
ZODIACTCF25
Ontologies - Pathways
QuickGOQ9BQ70
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  DNA binding  transcription corepressor activity  protein binding  nucleus  heart development  RQC complex  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  DNA binding  transcription corepressor activity  protein binding  nucleus  heart development  RQC complex  
NDEx NetworkTCF25
Atlas of Cancer Signalling NetworkTCF25
Wikipedia pathwaysTCF25
Orthology - Evolution
OrthoDB22980
GeneTree (enSembl)ENSG00000141002
Phylogenetic Trees/Animal Genes : TreeFamTCF25
Homologs : HomoloGeneTCF25
Homology/Alignments : Family Browser (UCSC)TCF25
Gene fusions - Rearrangements
Fusion : MitelmanTCF25/SPIRE2 [16q24.3/16q24.3]  
Fusion : QuiverTCF25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCF25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCF25
dbVarTCF25
ClinVarTCF25
MonarchTCF25
1000_GenomesTCF25 
Exome Variant ServerTCF25
GNOMAD BrowserENSG00000141002
Varsome BrowserTCF25
ACMGTCF25 variants
VarityQ9BQ70
Genomic Variants (DGV)TCF25 [DGVbeta]
DECIPHERTCF25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCF25 
Mutations
ICGC Data PortalTCF25 
TCGA Data PortalTCF25 
Broad Tumor PortalTCF25
OASIS PortalTCF25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCF25  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCF25
Mutations and Diseases : HGMDTCF25
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCF25
DgiDB (Drug Gene Interaction Database)TCF25
DoCM (Curated mutations)TCF25
CIViC (Clinical Interpretations of Variants in Cancer)TCF25
Cancer3DTCF25
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612326   
Orphanet
DisGeNETTCF25
MedgenTCF25
Genetic Testing Registry TCF25
NextProtQ9BQ70 [Medical]
GENETestsTCF25
Target ValidationTCF25
Huge Navigator TCF25 [HugePedia]
ClinGenTCF25
Clinical trials, drugs, therapy
MyCancerGenomeTCF25
Protein Interactions : CTDTCF25
Pharm GKB GenePA145007492
PharosQ9BQ70
Clinical trialTCF25
Miscellaneous
canSAR (ICR)TCF25
HarmonizomeTCF25
DataMed IndexTCF25
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCF25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:34 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.