Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCF7 (transcription factor 7)

Identity

Alias_namestranscription factor 7 (T-cell specific, HMG-box)
Alias_symbol (synonym)TCF-1
Other alias
HGNC (Hugo) TCF7
LocusID (NCBI) 6932
Atlas_Id 42494
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134115563 and ends at 134148229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TCF7 (5q31.1) / MPHOSPH9 (12q24.31)TCF7 (5q31.1) / MTPAP (10p11.23)TCF7 (5q31.1) / S100A14 (1q21.3)
TCF7 (5q31.1) / TOR1AIP2 (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias TL_t0511q31p11ID3249


External links

Nomenclature
HGNC (Hugo)TCF7   11639
Cards
Entrez_Gene (NCBI)TCF7  6932  transcription factor 7
AliasesTCF-1
GeneCards (Weizmann)TCF7
Ensembl hg19 (Hinxton)ENSG00000081059 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081059 [Gene_View]  ENSG00000081059 [Sequence]  chr5:134115563-134148229 [Contig_View]  TCF7 [Vega]
ICGC DataPortalENSG00000081059
TCGA cBioPortalTCF7
AceView (NCBI)TCF7
Genatlas (Paris)TCF7
WikiGenes6932
SOURCE (Princeton)TCF7
Genetics Home Reference (NIH)TCF7
Genomic and cartography
GoldenPath hg38 (UCSC)TCF7  -     chr5:134115563-134148229 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF7  -     5q31.1   [Description]    (hg19-Feb_2009)
GoldenPathTCF7 - 5q31.1 [CytoView hg19]  TCF7 - 5q31.1 [CytoView hg38]
ImmunoBaseENSG00000081059
Mapping of homologs : NCBITCF7 [Mapview hg19]  TCF7 [Mapview hg38]
OMIM189908   
Gene and transcription
Genbank (Entrez)AK057580 AK093530 AK093683 AK131428 AK310591
RefSeq transcript (Entrez)NM_001134851 NM_001134852 NM_001346425 NM_001346450 NM_001366502 NM_003202 NM_201632 NM_201634 NM_213648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCF7
Alternative Splicing GalleryENSG00000081059
Gene ExpressionTCF7 [ NCBI-GEO ]   TCF7 [ EBI - ARRAY_EXPRESS ]   TCF7 [ SEEK ]   TCF7 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6932
GTEX Portal (Tissue expression)TCF7
Human Protein AtlasENSG00000081059-TCF7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TCF7
DMDM Disease mutations6932
Blocks (Seattle)TCF7
Human Protein Atlas [tissue]ENSG00000081059-TCF7 [tissue]
HPRD01797
IPIIPI00003325   IPI00477635   IPI00479759   IPI00477092   IPI00478950   IPI00479370   IPI00478219   IPI00334125   IPI00385101   IPI00219960   IPI00219961   IPI00219962   IPI00402002   IPI00219964   IPI00219965   IPI00478992   IPI00976178   IPI00976158   IPI00973771   IPI00978938   IPI00980238   IPI00974251   IPI00978840   IPI00978134   IPI00981575   IPI00979543   
Protein Interaction databases
FunCoupENSG00000081059
BioGRIDTCF7
STRING (EMBL)TCF7
ZODIACTCF7
Ontologies - Pathways
Huge Navigator TCF7 [HugePedia]
snp3D : Map Gene to Disease6932
BioCentury BCIQTCF7
ClinGenTCF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6932
Chemical/Pharm GKB GenePA36392
Clinical trialTCF7
Miscellaneous
canSAR (ICR)TCF7 (select the gene name)
DataMed IndexTCF7
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCF7
EVEXTCF7
GoPubMedTCF7
iHOPTCF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:12:23 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.