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TCF7L1-IT1 (TCF7L1 intronic transcript 1)

Identity

Alias_namesTCF7L1 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) TCF7L1-IT1
LocusID (NCBI) 100874334
Atlas_Id 79922
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85186409 and ends at 85187253 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TCF7L1-IT1   41388
Cards
Entrez_Gene (NCBI)TCF7L1-IT1  100874334  TCF7L1 intronic transcript 1
Aliases
GeneCards (Weizmann)TCF7L1-IT1
Ensembl hg19 (Hinxton)ENSG00000231134 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231134 [Gene_View]  chr2:85186409-85187253 [Contig_View]  TCF7L1-IT1 [Vega]
ICGC DataPortalENSG00000231134
TCGA cBioPortalTCF7L1-IT1
AceView (NCBI)TCF7L1-IT1
Genatlas (Paris)TCF7L1-IT1
WikiGenes100874334
SOURCE (Princeton)TCF7L1-IT1
Genetics Home Reference (NIH)TCF7L1-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)TCF7L1-IT1  -     chr2:85186409-85187253 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF7L1-IT1  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblTCF7L1-IT1 - 2p11.2 [CytoView hg19]  TCF7L1-IT1 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBITCF7L1-IT1 [Mapview hg19]  TCF7L1-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB450376
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCF7L1-IT1
Cluster EST : UnigeneHs.693125 [ NCBI ]
CGAP (NCI)Hs.693125
Alternative Splicing GalleryENSG00000231134
Gene ExpressionTCF7L1-IT1 [ NCBI-GEO ]   TCF7L1-IT1 [ EBI - ARRAY_EXPRESS ]   TCF7L1-IT1 [ SEEK ]   TCF7L1-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF7L1-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874334
GTEX Portal (Tissue expression)TCF7L1-IT1
Human Protein AtlasENSG00000231134-TCF7L1-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TCF7L1-IT1
DMDM Disease mutations100874334
Blocks (Seattle)TCF7L1-IT1
Human Protein Atlas [tissue]ENSG00000231134-TCF7L1-IT1 [tissue]
Protein Interaction databases
FunCoupENSG00000231134
BioGRIDTCF7L1-IT1
STRING (EMBL)TCF7L1-IT1
ZODIACTCF7L1-IT1
Ontologies - Pathways
Huge Navigator TCF7L1-IT1 [HugePedia]
snp3D : Map Gene to Disease100874334
BioCentury BCIQTCF7L1-IT1
ClinGenTCF7L1-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874334
Clinical trialTCF7L1-IT1
Miscellaneous
canSAR (ICR)TCF7L1-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCF7M1-I1<+A>
EVEXTCF7L1-IT1
GoPubMedTCF7L1-IT1
iHOPTCF7L1-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:34 CET 2017

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