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TCF7L2 (transcription factor 7 like 2)

Identity

Alias (NCBI)TCF-4
TCF4
HGNC (Hugo) TCF7L2
HGNC Alias symbTCF-4
HGNC Previous nameTCF4
HGNC Previous nametranscription factor 7-like 2 (T-cell specific, HMG-box)
LocusID (NCBI) 6934
Atlas_Id 42496
Location 10q25.2  [Link to chromosome band 10q25]
Location_base_pair Starts at 112950247 and ends at 113167677 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM168B (2q21.1) / TCF7L2 (10q25.2)TCF7L2 (10q25.2) / ATP5G3 (2q31.1)TCF7L2 (10q25.2) / CHD6 (20q12)
TCF7L2 (10q25.2) / KIAA0391 (14q13.2)TCF7L2 (10q25.2) / PTPRC (1q31.3)TCF7L2 (10q25.2) / TACC2 (10q26.13)
TCF7L2 (10q25.2) / VTI1A (10q25.2)VTI1A (10q25.2) / TCF7L2 (10q25.2)VTI1A 10q25.2 / TCF7L2 10q25.2
TCF7L2 10q25.2 / TACC2 10q26.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TCF7L2   11641
Cards
Entrez_Gene (NCBI)TCF7L2    transcription factor 7 like 2
AliasesTCF-4; TCF4
GeneCards (Weizmann)TCF7L2
Ensembl hg19 (Hinxton)ENSG00000148737 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148737 [Gene_View]  ENSG00000148737 [Sequence]  chr10:112950247-113167677 [Contig_View]  TCF7L2 [Vega]
ICGC DataPortalENSG00000148737
TCGA cBioPortalTCF7L2
AceView (NCBI)TCF7L2
Genatlas (Paris)TCF7L2
SOURCE (Princeton)TCF7L2
Genetics Home Reference (NIH)TCF7L2
Genomic and cartography
GoldenPath hg38 (UCSC)TCF7L2  -     chr10:112950247-113167677 +  10q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCF7L2  -     10q25.2   [Description]    (hg19-Feb_2009)
GoldenPathTCF7L2 - 10q25.2 [CytoView hg19]  TCF7L2 - 10q25.2 [CytoView hg38]
ImmunoBaseENSG00000148737
Genome Data Viewer NCBITCF7L2 [Mapview hg19]  
OMIM125853   602228   
Gene and transcription
Genbank (Entrez)AB034691 AB440195 AB451266 AK074705 AK225809
RefSeq transcript (Entrez)NM_001146274 NM_001146283 NM_001146284 NM_001146285 NM_001146286 NM_001198525 NM_001198526 NM_001198527 NM_001198528 NM_001198529 NM_001198530 NM_001198531 NM_001349870 NM_001349871 NM_001363501 NM_001367943 NM_030756
Consensus coding sequences : CCDS (NCBI)TCF7L2
Gene ExpressionTCF7L2 [ NCBI-GEO ]   TCF7L2 [ EBI - ARRAY_EXPRESS ]   TCF7L2 [ SEEK ]   TCF7L2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCF7L2 [ Firebrowse - Broad ]
GenevisibleExpression of TCF7L2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6934
GTEX Portal (Tissue expression)TCF7L2
Human Protein AtlasENSG00000148737-TCF7L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TCF7L2
Human Protein Atlas [tissue]ENSG00000148737-TCF7L2 [tissue]
HPRD03751
Protein Interaction databases
BioGRIDTCF7L2
STRING (EMBL)TCF7L2
ZODIACTCF7L2
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCF7L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:35 CEST 2021
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