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TCHP (trichoplein keratin filament binding)

Identity

Alias_namestrichoplein
Alias_symbol (synonym)MGC10854
TpMs
Other alias
HGNC (Hugo) TCHP
LocusID (NCBI) 84260
Atlas_Id 51319
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 110338079 and ends at 110355874 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TCHP (12q24.11) / TCHP (12q24.11)TCHP (12q24.11) / UBASH3A (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCHP   28135
Cards
Entrez_Gene (NCBI)TCHP  84260  trichoplein keratin filament binding
AliasesTpMs
GeneCards (Weizmann)TCHP
Ensembl hg19 (Hinxton)ENSG00000139437 [Gene_View]  chr12:110338079-110355874 [Contig_View]  TCHP [Vega]
Ensembl hg38 (Hinxton)ENSG00000139437 [Gene_View]  chr12:110338079-110355874 [Contig_View]  TCHP [Vega]
ICGC DataPortalENSG00000139437
TCGA cBioPortalTCHP
AceView (NCBI)TCHP
Genatlas (Paris)TCHP
WikiGenes84260
SOURCE (Princeton)TCHP
Genetics Home Reference (NIH)TCHP
Genomic and cartography
GoldenPath hg19 (UCSC)TCHP  -     chr12:110338079-110355874 +  12q24.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TCHP  -     12q24.11   [Description]    (hg38-Dec_2013)
EnsemblTCHP - 12q24.11 [CytoView hg19]  TCHP - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBITCHP [Mapview hg19]  TCHP [Mapview hg38]
OMIM612654   
Gene and transcription
Genbank (Entrez)AK000079 AK092736 AK301262 AY007230 AY210413
RefSeq transcript (Entrez)NM_001143852 NM_032300
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)TCHP
Cluster EST : UnigeneHs.410924 [ NCBI ]
CGAP (NCI)Hs.410924
Alternative Splicing GalleryENSG00000139437
Gene ExpressionTCHP [ NCBI-GEO ]   TCHP [ EBI - ARRAY_EXPRESS ]   TCHP [ SEEK ]   TCHP [ MEM ]
Gene Expression Viewer (FireBrowse)TCHP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84260
GTEX Portal (Tissue expression)TCHP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT92
Splice isoforms : SwissVarQ9BT92
PhosPhoSitePlusQ9BT92
Domains : Interpro (EBI)TCHP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TCHP
DMDM Disease mutations84260
Blocks (Seattle)TCHP
SuperfamilyQ9BT92
Human Protein AtlasENSG00000139437
Peptide AtlasQ9BT92
HPRD14403
IPIIPI00031104   IPI00791176   IPI01022536   
Protein Interaction databases
DIP (DOE-UCLA)Q9BT92
IntAct (EBI)Q9BT92
FunCoupENSG00000139437
BioGRIDTCHP
STRING (EMBL)TCHP
ZODIACTCHP
Ontologies - Pathways
QuickGOQ9BT92
Ontology : AmiGOprotein binding  cytoplasm  mitochondrion  centrosome  plasma membrane  apoptotic process  cell projection organization  desmosome  negative regulation of cell growth  keratin filament  apical cortex  ciliary transition fiber  negative regulation of cilium assembly  
Ontology : EGO-EBIprotein binding  cytoplasm  mitochondrion  centrosome  plasma membrane  apoptotic process  cell projection organization  desmosome  negative regulation of cell growth  keratin filament  apical cortex  ciliary transition fiber  negative regulation of cilium assembly  
NDEx NetworkTCHP
Atlas of Cancer Signalling NetworkTCHP
Wikipedia pathwaysTCHP
Orthology - Evolution
OrthoDB84260
GeneTree (enSembl)ENSG00000139437
Phylogenetic Trees/Animal Genes : TreeFamTCHP
HOVERGENQ9BT92
HOGENOMQ9BT92
Homologs : HomoloGeneTCHP
Homology/Alignments : Family Browser (UCSC)TCHP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCHP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCHP
dbVarTCHP
ClinVarTCHP
1000_GenomesTCHP 
Exome Variant ServerTCHP
ExAC (Exome Aggregation Consortium)TCHP (select the gene name)
Genetic variants : HAPMAP84260
Genomic Variants (DGV)TCHP [DGVbeta]
DECIPHER (Syndromes)12:110338079-110355874  ENSG00000139437
CONAN: Copy Number AnalysisTCHP 
Mutations
ICGC Data PortalTCHP 
TCGA Data PortalTCHP 
Broad Tumor PortalTCHP
OASIS PortalTCHP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCHP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCHP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCHP
DgiDB (Drug Gene Interaction Database)TCHP
DoCM (Curated mutations)TCHP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCHP (select a term)
intoGenTCHP
Cancer3DTCHP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612654   
Orphanet
MedgenTCHP
Genetic Testing Registry TCHP
NextProtQ9BT92 [Medical]
TSGene84260
GENETestsTCHP
Huge Navigator TCHP [HugePedia]
snp3D : Map Gene to Disease84260
BioCentury BCIQTCHP
ClinGenTCHP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84260
Chemical/Pharm GKB GenePA143485629
Clinical trialTCHP
Miscellaneous
canSAR (ICR)TCHP (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCHP
EVEXTCHP
GoPubMedTCHP
iHOPTCHP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:30:38 CET 2017

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