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TCIM (transcriptional and immune response regulator)

Identity

Other aliasC8orf4
TC-1
TC1
HGNC (Hugo) TCIM
LocusID (NCBI) 56892
Atlas_Id 57173
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 40153484 and ends at 40154813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TCIM   1357
Cards
Entrez_Gene (NCBI)TCIM  56892  transcriptional and immune response regulator
AliasesC8orf4; TC-1; TC1
GeneCards (Weizmann)TCIM
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:40153484-40154813 [Contig_View]  TCIM [Vega]
TCGA cBioPortalTCIM
AceView (NCBI)TCIM
Genatlas (Paris)TCIM
WikiGenes56892
SOURCE (Princeton)TCIM
Genetics Home Reference (NIH)TCIM
Genomic and cartography
GoldenPath hg38 (UCSC)TCIM  -     chr8:40153484-40154813 +  8p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCIM  -     8p11.21   [Description]    (hg19-Feb_2009)
EnsemblTCIM - 8p11.21 [CytoView hg19]  TCIM - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBITCIM [Mapview hg19]  TCIM [Mapview hg38]
OMIM607702   
Gene and transcription
Genbank (Entrez)AF268037 AI861861 AI935347 AK026240 BC020623
RefSeq transcript (Entrez)NM_020130
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCIM
Cluster EST : UnigeneHs.745031 [ NCBI ]
CGAP (NCI)Hs.745031
Gene ExpressionTCIM [ NCBI-GEO ]   TCIM [ EBI - ARRAY_EXPRESS ]   TCIM [ SEEK ]   TCIM [ MEM ]
Gene Expression Viewer (FireBrowse)TCIM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56892
GTEX Portal (Tissue expression)TCIM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR00
Splice isoforms : SwissVarQ9NR00
PhosPhoSitePlusQ9NR00
Domains : Interpro (EBI)Avpi1/C8orf4   
Domain families : Pfam (Sanger)TC1 (PF15063)   
Domain families : Pfam (NCBI)pfam15063   
Domain structure : Prodom (Prabi Lyon)Arg_vasopressin-induced_prot_1 (PD287216)   
Conserved Domain (NCBI)TCIM
DMDM Disease mutations56892
Blocks (Seattle)TCIM
SuperfamilyQ9NR00
Peptide AtlasQ9NR00
IPIIPI00024500   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR00
IntAct (EBI)Q9NR00
BioGRIDTCIM
STRING (EMBL)TCIM
ZODIACTCIM
Ontologies - Pathways
QuickGOQ9NR00
Ontology : AmiGOendothelial cell activation involved in immune response  Notch binding  protein binding  intracellular  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  plasma membrane  apoptotic process  positive regulation of protein kinase A signaling  nuclear speck  cellular response to heat  positive regulation of NF-kappaB import into nucleus  negative regulation of apoptotic process  regulation of DNA-templated transcription in response to stress  negative regulation of Notch signaling pathway  positive regulation of protein kinase C activity  regulation of cell cycle G1/S phase transition  regulation of hemopoiesis  
Ontology : EGO-EBIendothelial cell activation involved in immune response  Notch binding  protein binding  intracellular  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  plasma membrane  apoptotic process  positive regulation of protein kinase A signaling  nuclear speck  cellular response to heat  positive regulation of NF-kappaB import into nucleus  negative regulation of apoptotic process  regulation of DNA-templated transcription in response to stress  negative regulation of Notch signaling pathway  positive regulation of protein kinase C activity  regulation of cell cycle G1/S phase transition  regulation of hemopoiesis  
NDEx NetworkTCIM
Atlas of Cancer Signalling NetworkTCIM
Wikipedia pathwaysTCIM
Orthology - Evolution
OrthoDB56892
Phylogenetic Trees/Animal Genes : TreeFamTCIM
HOVERGENQ9NR00
HOGENOMQ9NR00
Homologs : HomoloGeneTCIM
Homology/Alignments : Family Browser (UCSC)TCIM
Gene fusions - Rearrangements
Tumor Fusion PortalTCIM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCIM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCIM
dbVarTCIM
ClinVarTCIM
1000_GenomesTCIM 
Exome Variant ServerTCIM
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP56892
Genomic Variants (DGV)TCIM [DGVbeta]
DECIPHERTCIM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCIM 
Mutations
ICGC Data PortalTCIM 
TCGA Data PortalTCIM 
Broad Tumor PortalTCIM
OASIS PortalTCIM [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTCIM
BioMutasearch TCIM
DgiDB (Drug Gene Interaction Database)TCIM
DoCM (Curated mutations)TCIM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCIM (select a term)
intoGenTCIM
Cancer3DTCIM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607702   
Orphanet
DisGeNETTCIM
MedgenTCIM
Genetic Testing Registry TCIM
NextProtQ9NR00 [Medical]
TSGene56892
GENETestsTCIM
Target ValidationTCIM
Huge Navigator TCIM [HugePedia]
snp3D : Map Gene to Disease56892
BioCentury BCIQTCIM
ClinGenTCIM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56892
Chemical/Pharm GKB GenePA25962
Clinical trialTCIM
Miscellaneous
canSAR (ICR)TCIM (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCIM
EVEXTCIM
GoPubMedTCIM
iHOPTCIM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:37:59 CET 2017

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