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TCP10L2 (t-complex 10 like 2)

Identity

Alias (NCBI)-
HGNC (Hugo) TCP10L2
HGNC Alias symbbA517H2.3
HGNC Previous namet-complex 10-like 2 (mouse)
LocusID (NCBI) 401285
Atlas_Id 74588
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 167170593 and ends at 167182908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCP10L2   21254
Cards
Entrez_Gene (NCBI)TCP10L2  401285  t-complex 10 like 2
Aliases
GeneCards (Weizmann)TCP10L2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:167170593-167182908 [Contig_View]  TCP10L2 [Vega]
TCGA cBioPortalTCP10L2
AceView (NCBI)TCP10L2
Genatlas (Paris)TCP10L2
WikiGenes401285
SOURCE (Princeton)TCP10L2
Genetics Home Reference (NIH)TCP10L2
Genomic and cartography
GoldenPath hg38 (UCSC)TCP10L2  -     chr6:167170593-167182908 +  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCP10L2  -     6q27   [Description]    (hg19-Feb_2009)
GoldenPathTCP10L2 - 6q27 [CytoView hg19]  TCP10L2 - 6q27 [CytoView hg38]
genome Data Viewer NCBITCP10L2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001013683 NM_001145121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCP10L2
Gene ExpressionTCP10L2 [ NCBI-GEO ]   TCP10L2 [ EBI - ARRAY_EXPRESS ]   TCP10L2 [ SEEK ]   TCP10L2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCP10L2 [ Firebrowse - Broad ]
GenevisibleExpression of TCP10L2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401285
GTEX Portal (Tissue expression)TCP10L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtB9ZVM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB9ZVM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB9ZVM9
Splice isoforms : SwissVarB9ZVM9
PhosPhoSitePlusB9ZVM9
Domains : Interpro (EBI)TCP10_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TCP10L2
DMDM Disease mutations401285
Blocks (Seattle)TCP10L2
SuperfamilyB9ZVM9
Peptide AtlasB9ZVM9
HPRD18427
IPIIPI01011167   IPI01010662   IPI00873524   
Protein Interaction databases
DIP (DOE-UCLA)B9ZVM9
IntAct (EBI)B9ZVM9
BioGRIDTCP10L2
STRING (EMBL)TCP10L2
ZODIACTCP10L2
Ontologies - Pathways
QuickGOB9ZVM9
Ontology : AmiGOtranscription corepressor activity  nucleus  centriole  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBItranscription corepressor activity  nucleus  centriole  negative regulation of nucleic acid-templated transcription  
NDEx NetworkTCP10L2
Atlas of Cancer Signalling NetworkTCP10L2
Wikipedia pathwaysTCP10L2
Orthology - Evolution
OrthoDB401285
Phylogenetic Trees/Animal Genes : TreeFamTCP10L2
HOGENOMB9ZVM9
Homologs : HomoloGeneTCP10L2
Homology/Alignments : Family Browser (UCSC)TCP10L2
Gene fusions - Rearrangements
Fusion : QuiverTCP10L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCP10L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCP10L2
dbVarTCP10L2
ClinVarTCP10L2
1000_GenomesTCP10L2 
Exome Variant ServerTCP10L2
Varsome BrowserTCP10L2
Genetic variants : HAPMAP401285
Genomic Variants (DGV)TCP10L2 [DGVbeta]
DECIPHERTCP10L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCP10L2 
Mutations
ICGC Data PortalTCP10L2 
TCGA Data PortalTCP10L2 
Broad Tumor PortalTCP10L2
OASIS PortalTCP10L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCP10L2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCP10L2
Mutations and Diseases : HGMDTCP10L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCP10L2
DgiDB (Drug Gene Interaction Database)TCP10L2
DoCM (Curated mutations)TCP10L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCP10L2 (select a term)
intoGenTCP10L2
Cancer3DTCP10L2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCP10L2
MedgenTCP10L2
Genetic Testing Registry TCP10L2
NextProtB9ZVM9 [Medical]
TSGene401285
GENETestsTCP10L2
Target ValidationTCP10L2
Huge Navigator TCP10L2 [HugePedia]
snp3D : Map Gene to Disease401285
BioCentury BCIQTCP10L2
ClinGenTCP10L2
Clinical trials, drugs, therapy
Protein Interactions : CTD401285
Pharm GKB GenePA134917651
Clinical trialTCP10L2
Miscellaneous
canSAR (ICR)TCP10L2 (select the gene name)
HarmonizomeTCP10L2
DataMed IndexTCP10L2
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCP10L2
EVEXTCP10L2
GoPubMedTCP10L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:37:33 CEST 2020

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