Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCP11 (t-complex 11)

Identity

Alias_namesD6S230E
t-complex 11 (a murine tcp homolog)
t-complex 11 homolog (mouse)
t-complex 11, testis-specific
Alias_symbol (synonym)KIAA0229
FPPR
Other alias
HGNC (Hugo) TCP11
LocusID (NCBI) 6954
Atlas_Id 74589
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 35118071 and ends at 35141410 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCP11   11658
Cards
Entrez_Gene (NCBI)TCP11  6954  t-complex 11
AliasesD6S230E; FPPR
GeneCards (Weizmann)TCP11
Ensembl hg19 (Hinxton)ENSG00000124678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124678 [Gene_View]  ENSG00000124678 [Sequence]  chr6:35118071-35141410 [Contig_View]  TCP11 [Vega]
ICGC DataPortalENSG00000124678
TCGA cBioPortalTCP11
AceView (NCBI)TCP11
Genatlas (Paris)TCP11
WikiGenes6954
SOURCE (Princeton)TCP11
Genetics Home Reference (NIH)TCP11
Genomic and cartography
GoldenPath hg38 (UCSC)TCP11  -     chr6:35118071-35141410 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCP11  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblTCP11 - 6p21.31 [CytoView hg19]  TCP11 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBITCP11 [Mapview hg19]  TCP11 [Mapview hg38]
OMIM186982   
Gene and transcription
Genbank (Entrez)AF260330 AF269223 AF536532 AF536533 AK057234
RefSeq transcript (Entrez)NM_001093728 NM_001261817 NM_001261818 NM_001261819 NM_001261820 NM_001261821 NM_018679
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCP11
Cluster EST : UnigeneHs.435371 [ NCBI ]
CGAP (NCI)Hs.435371
Alternative Splicing GalleryENSG00000124678
Gene ExpressionTCP11 [ NCBI-GEO ]   TCP11 [ EBI - ARRAY_EXPRESS ]   TCP11 [ SEEK ]   TCP11 [ MEM ]
Gene Expression Viewer (FireBrowse)TCP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6954
GTEX Portal (Tissue expression)TCP11
Human Protein AtlasENSG00000124678-TCP11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWU5
Splice isoforms : SwissVarQ8WWU5
PhosPhoSitePlusQ8WWU5
Domains : Interpro (EBI)Tcp11   
Domain families : Pfam (Sanger)Tcp11 (PF05794)   
Domain families : Pfam (NCBI)pfam05794   
Conserved Domain (NCBI)TCP11
DMDM Disease mutations6954
Blocks (Seattle)TCP11
SuperfamilyQ8WWU5
Human Protein Atlas [tissue]ENSG00000124678-TCP11 [tissue]
Peptide AtlasQ8WWU5
HPRD01749
IPIIPI00103433   IPI00396136   IPI00888582   IPI01010258   IPI00513838   IPI00645645   IPI00514305   IPI00644536   IPI00966065   IPI00966394   IPI00966696   IPI00965769   IPI00967548   IPI00965939   IPI01012310   IPI00967809   IPI00965207   IPI00964748   IPI00964594   IPI00964282   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWU5
IntAct (EBI)Q8WWU5
FunCoupENSG00000124678
BioGRIDTCP11
STRING (EMBL)TCP11
ZODIACTCP11
Ontologies - Pathways
QuickGOQ8WWU5
Ontology : AmiGO###############################################################################################################################################################################################################################################################                          
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                          
NDEx NetworkTCP11
Atlas of Cancer Signalling NetworkTCP11
Wikipedia pathwaysTCP11
Orthology - Evolution
OrthoDB6954
GeneTree (enSembl)ENSG00000124678
Phylogenetic Trees/Animal Genes : TreeFamTCP11
HOVERGENQ8WWU5
HOGENOMQ8WWU5
Homologs : HomoloGeneTCP11
Homology/Alignments : Family Browser (UCSC)TCP11
Gene fusions - Rearrangements
Fusion : QuiverTCP11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCP11
dbVarTCP11
ClinVarTCP11
1000_GenomesTCP11 
Exome Variant ServerTCP11
ExAC (Exome Aggregation Consortium)ENSG00000124678
GNOMAD BrowserENSG00000124678
Varsome BrowserTCP11
Genetic variants : HAPMAP6954
Genomic Variants (DGV)TCP11 [DGVbeta]
DECIPHERTCP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCP11 
Mutations
ICGC Data PortalTCP11 
TCGA Data PortalTCP11 
Broad Tumor PortalTCP11
OASIS PortalTCP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCP11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCP11
DgiDB (Drug Gene Interaction Database)TCP11
DoCM (Curated mutations)TCP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCP11 (select a term)
intoGenTCP11
Cancer3DTCP11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186982   
Orphanet
DisGeNETTCP11
MedgenTCP11
Genetic Testing Registry TCP11
NextProtQ8WWU5 [Medical]
TSGene6954
GENETestsTCP11
Target ValidationTCP11
Huge Navigator TCP11 [HugePedia]
snp3D : Map Gene to Disease6954
BioCentury BCIQTCP11
ClinGenTCP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6954
Chemical/Pharm GKB GenePA36409
Clinical trialTCP11
Miscellaneous
canSAR (ICR)TCP11 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCP11
EVEXTCP11
GoPubMedTCP11
iHOPTCP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:34:22 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.