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TCP11L1 (t-complex 11 like 1)

Identity

Alias_namest-complex 11 (mouse) like 1
t-complex 11, testis-specific-like 1
Alias_symbol (synonym)FLJ11336
Other aliasdJ85M6.3
HGNC (Hugo) TCP11L1
LocusID (NCBI) 55346
Atlas_Id 54695
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 33039417 and ends at 33073563 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNHD1 (11p15.4) / TCP11L1 (11p13)TCP11L1 (11p13) / TCP11L1 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TCP11L1   25655
Cards
Entrez_Gene (NCBI)TCP11L1  55346  t-complex 11 like 1
AliasesdJ85M6.3
GeneCards (Weizmann)TCP11L1
Ensembl hg19 (Hinxton)ENSG00000176148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176148 [Gene_View]  ENSG00000176148 [Sequence]  chr11:33039417-33073563 [Contig_View]  TCP11L1 [Vega]
ICGC DataPortalENSG00000176148
TCGA cBioPortalTCP11L1
AceView (NCBI)TCP11L1
Genatlas (Paris)TCP11L1
WikiGenes55346
SOURCE (Princeton)TCP11L1
Genetics Home Reference (NIH)TCP11L1
Genomic and cartography
GoldenPath hg38 (UCSC)TCP11L1  -     chr11:33039417-33073563 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCP11L1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblTCP11L1 - 21q22.11 [CytoView hg19]  TCP11L1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBITCP11L1 [Mapview hg19]  TCP11L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002198 AK021448 AK090646 BC030582 BC041696
RefSeq transcript (Entrez)NM_001145541 NM_018393
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCP11L1
Cluster EST : UnigeneHs.655341 [ NCBI ]
CGAP (NCI)Hs.655341
Alternative Splicing GalleryENSG00000176148
Gene ExpressionTCP11L1 [ NCBI-GEO ]   TCP11L1 [ EBI - ARRAY_EXPRESS ]   TCP11L1 [ SEEK ]   TCP11L1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCP11L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55346
GTEX Portal (Tissue expression)TCP11L1
Human Protein AtlasENSG00000176148-TCP11L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUJ3
Splice isoforms : SwissVarQ9NUJ3
PhosPhoSitePlusQ9NUJ3
Domains : Interpro (EBI)Tcp11   
Domain families : Pfam (Sanger)Tcp11 (PF05794)   
Domain families : Pfam (NCBI)pfam05794   
Conserved Domain (NCBI)TCP11L1
DMDM Disease mutations55346
Blocks (Seattle)TCP11L1
SuperfamilyQ9NUJ3
Human Protein Atlas [tissue]ENSG00000176148-TCP11L1 [tissue]
Peptide AtlasQ9NUJ3
HPRD07750
IPIIPI00383444   IPI00976852   IPI00981537   IPI00293011   IPI00980908   IPI00979772   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUJ3
IntAct (EBI)Q9NUJ3
FunCoupENSG00000176148
BioGRIDTCP11L1
STRING (EMBL)TCP11L1
ZODIACTCP11L1
Ontologies - Pathways
QuickGOQ9NUJ3
Ontology : AmiGOmicrotubule  
Ontology : EGO-EBImicrotubule  
NDEx NetworkTCP11L1
Atlas of Cancer Signalling NetworkTCP11L1
Wikipedia pathwaysTCP11L1
Orthology - Evolution
OrthoDB55346
GeneTree (enSembl)ENSG00000176148
Phylogenetic Trees/Animal Genes : TreeFamTCP11L1
HOVERGENQ9NUJ3
HOGENOMQ9NUJ3
Homologs : HomoloGeneTCP11L1
Homology/Alignments : Family Browser (UCSC)TCP11L1
Gene fusions - Rearrangements
Fusion : QuiverTCP11L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCP11L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCP11L1
dbVarTCP11L1
ClinVarTCP11L1
1000_GenomesTCP11L1 
Exome Variant ServerTCP11L1
ExAC (Exome Aggregation Consortium)ENSG00000176148
GNOMAD BrowserENSG00000176148
Varsome BrowserTCP11L1
Genetic variants : HAPMAP55346
Genomic Variants (DGV)TCP11L1 [DGVbeta]
DECIPHERTCP11L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCP11L1 
Mutations
ICGC Data PortalTCP11L1 
TCGA Data PortalTCP11L1 
Broad Tumor PortalTCP11L1
OASIS PortalTCP11L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCP11L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCP11L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCP11L1
DgiDB (Drug Gene Interaction Database)TCP11L1
DoCM (Curated mutations)TCP11L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCP11L1 (select a term)
intoGenTCP11L1
Cancer3DTCP11L1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCP11L1
MedgenTCP11L1
Genetic Testing Registry TCP11L1
NextProtQ9NUJ3 [Medical]
TSGene55346
GENETestsTCP11L1
Target ValidationTCP11L1
Huge Navigator TCP11L1 [HugePedia]
snp3D : Map Gene to Disease55346
BioCentury BCIQTCP11L1
ClinGenTCP11L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55346
Chemical/Pharm GKB GenePA142670824
Clinical trialTCP11L1
Miscellaneous
canSAR (ICR)TCP11L1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCP11L1
EVEXTCP11L1
GoPubMedTCP11L1
iHOPTCP11L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Aug 16 11:36:36 CEST 2018
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