Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCP11L1 (t-complex 11 like 1)

Identity

Alias (NCBI)dJ85M6.3
HGNC (Hugo) TCP11L1
HGNC Alias symbFLJ11336
HGNC Previous namet-complex 11 (mouse) like 1
 t-complex 11, testis-specific-like 1
LocusID (NCBI) 55346
Atlas_Id 54695
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 33039572 and ends at 33073549 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNHD1 (11p15.4) / TCP11L1 (11p13)TCP11L1 (11p13) / TCP11L1 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TCP11L1   25655
Cards
Entrez_Gene (NCBI)TCP11L1    t-complex 11 like 1
AliasesdJ85M6.3
GeneCards (Weizmann)TCP11L1
Ensembl hg19 (Hinxton)ENSG00000176148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176148 [Gene_View]  ENSG00000176148 [Sequence]  chr11:33039572-33073549 [Contig_View]  TCP11L1 [Vega]
ICGC DataPortalENSG00000176148
TCGA cBioPortalTCP11L1
AceView (NCBI)TCP11L1
Genatlas (Paris)TCP11L1
SOURCE (Princeton)TCP11L1
Genetics Home Reference (NIH)TCP11L1
Genomic and cartography
GoldenPath hg38 (UCSC)TCP11L1  -     chr11:33039572-33073549 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCP11L1  -     11p13   [Description]    (hg19-Feb_2009)
GoldenPathTCP11L1 - 11p13 [CytoView hg19]  TCP11L1 - 11p13 [CytoView hg38]
ImmunoBaseENSG00000176148
genome Data Viewer NCBITCP11L1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK002198 AK021448 AK090646 BC030582 BC041696
RefSeq transcript (Entrez)NM_001145541 NM_018393
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCP11L1
Alternative Splicing GalleryENSG00000176148
Gene ExpressionTCP11L1 [ NCBI-GEO ]   TCP11L1 [ EBI - ARRAY_EXPRESS ]   TCP11L1 [ SEEK ]   TCP11L1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCP11L1 [ Firebrowse - Broad ]
GenevisibleExpression of TCP11L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55346
GTEX Portal (Tissue expression)TCP11L1
Human Protein AtlasENSG00000176148-TCP11L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUJ3
Splice isoforms : SwissVarQ9NUJ3
PhosPhoSitePlusQ9NUJ3
Domains : Interpro (EBI)Tcp11   
Domain families : Pfam (Sanger)Tcp11 (PF05794)   
Domain families : Pfam (NCBI)pfam05794   
Conserved Domain (NCBI)TCP11L1
Blocks (Seattle)TCP11L1
SuperfamilyQ9NUJ3
Human Protein Atlas [tissue]ENSG00000176148-TCP11L1 [tissue]
Peptide AtlasQ9NUJ3
HPRD07750
IPIIPI00383444   IPI00976852   IPI00981537   IPI00293011   IPI00980908   IPI00979772   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUJ3
IntAct (EBI)Q9NUJ3
BioGRIDTCP11L1
STRING (EMBL)TCP11L1
ZODIACTCP11L1
Ontologies - Pathways
QuickGOQ9NUJ3
Ontology : AmiGOmicrotubule  signal transduction  
Ontology : EGO-EBImicrotubule  signal transduction  
NDEx NetworkTCP11L1
Atlas of Cancer Signalling NetworkTCP11L1
Wikipedia pathwaysTCP11L1
Orthology - Evolution
OrthoDB55346
GeneTree (enSembl)ENSG00000176148
Phylogenetic Trees/Animal Genes : TreeFamTCP11L1
HOGENOMQ9NUJ3
Homologs : HomoloGeneTCP11L1
Homology/Alignments : Family Browser (UCSC)TCP11L1
Gene fusions - Rearrangements
Fusion : QuiverTCP11L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCP11L1 [hg38]
dbVarTCP11L1
ClinVarTCP11L1
MonarchTCP11L1
1000_GenomesTCP11L1 
Exome Variant ServerTCP11L1
GNOMAD BrowserENSG00000176148
Varsome BrowserTCP11L1
Genomic Variants (DGV)TCP11L1 [DGVbeta]
DECIPHERTCP11L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCP11L1 
Mutations
ICGC Data PortalTCP11L1 
TCGA Data PortalTCP11L1 
Broad Tumor PortalTCP11L1
OASIS PortalTCP11L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCP11L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCP11L1
Mutations and Diseases : HGMDTCP11L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCP11L1
DgiDB (Drug Gene Interaction Database)TCP11L1
DoCM (Curated mutations)TCP11L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCP11L1 (select a term)
intoGenTCP11L1
Cancer3DTCP11L1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCP11L1
MedgenTCP11L1
Genetic Testing Registry TCP11L1
NextProtQ9NUJ3 [Medical]
GENETestsTCP11L1
Target ValidationTCP11L1
Huge Navigator TCP11L1 [HugePedia]
ClinGenTCP11L1
Clinical trials, drugs, therapy
MyCancerGenomeTCP11L1
Protein Interactions : CTD
Pharm GKB GenePA142670824
PharosQ9NUJ3
Clinical trialTCP11L1
Miscellaneous
canSAR (ICR)TCP11L1 (select the gene name)
HarmonizomeTCP11L1
DataMed IndexTCP11L1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCP11L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:40:44 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.