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TCP11L2 (t-complex 11 like 2)

Identity

Alias (NCBI)-
HGNC (Hugo) TCP11L2
HGNC Alias symbMGC40368
HGNC Previous namet-complex 11 (mouse) like 2
 t-complex 11 (mouse)-like 2
 t-complex 11, testis-specific-like 2
LocusID (NCBI) 255394
Atlas_Id 53657
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 106302733 and ends at 106347003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCP11L2   28627
Cards
Entrez_Gene (NCBI)TCP11L2    t-complex 11 like 2
Aliases
GeneCards (Weizmann)TCP11L2
Ensembl hg19 (Hinxton)ENSG00000166046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166046 [Gene_View]  ENSG00000166046 [Sequence]  chr12:106302733-106347003 [Contig_View]  TCP11L2 [Vega]
ICGC DataPortalENSG00000166046
TCGA cBioPortalTCP11L2
AceView (NCBI)TCP11L2
Genatlas (Paris)TCP11L2
SOURCE (Princeton)TCP11L2
Genetics Home Reference (NIH)TCP11L2
Genomic and cartography
GoldenPath hg38 (UCSC)TCP11L2  -     chr12:106302733-106347003 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCP11L2  -     12q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTCP11L2 - 12q23.3 [CytoView hg19]  TCP11L2 - 12q23.3 [CytoView hg38]
ImmunoBaseENSG00000166046
Genome Data Viewer NCBITCP11L2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF306671 AF306672 AF306673 AF306674 AF306858
RefSeq transcript (Entrez)NM_001286262 NM_152772
Consensus coding sequences : CCDS (NCBI)TCP11L2
Gene ExpressionTCP11L2 [ NCBI-GEO ]   TCP11L2 [ EBI - ARRAY_EXPRESS ]   TCP11L2 [ SEEK ]   TCP11L2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCP11L2 [ Firebrowse - Broad ]
GenevisibleExpression of TCP11L2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255394
GTEX Portal (Tissue expression)TCP11L2
Human Protein AtlasENSG00000166046-TCP11L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4U5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4U5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4U5
PhosPhoSitePlusQ8N4U5
Domains : Interpro (EBI)Tcp11   
Domain families : Pfam (Sanger)Tcp11 (PF05794)   
Domain families : Pfam (NCBI)pfam05794   
Conserved Domain (NCBI)TCP11L2
SuperfamilyQ8N4U5
AlphaFold pdb e-kbQ8N4U5   
Human Protein Atlas [tissue]ENSG00000166046-TCP11L2 [tissue]
HPRD17555
Protein Interaction databases
DIP (DOE-UCLA)Q8N4U5
IntAct (EBI)Q8N4U5
BioGRIDTCP11L2
STRING (EMBL)TCP11L2
ZODIACTCP11L2
Ontologies - Pathways
QuickGOQ8N4U5
Ontology : AmiGOprotein binding  signal transduction  
Ontology : EGO-EBIprotein binding  signal transduction  
NDEx NetworkTCP11L2
Atlas of Cancer Signalling NetworkTCP11L2
Wikipedia pathwaysTCP11L2
Orthology - Evolution
OrthoDB255394
GeneTree (enSembl)ENSG00000166046
Phylogenetic Trees/Animal Genes : TreeFamTCP11L2
Homologs : HomoloGeneTCP11L2
Homology/Alignments : Family Browser (UCSC)TCP11L2
Gene fusions - Rearrangements
Fusion : QuiverTCP11L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCP11L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCP11L2
dbVarTCP11L2
ClinVarTCP11L2
MonarchTCP11L2
1000_GenomesTCP11L2 
Exome Variant ServerTCP11L2
GNOMAD BrowserENSG00000166046
Varsome BrowserTCP11L2
ACMGTCP11L2 variants
VarityQ8N4U5
Genomic Variants (DGV)TCP11L2 [DGVbeta]
DECIPHERTCP11L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCP11L2 
Mutations
ICGC Data PortalTCP11L2 
TCGA Data PortalTCP11L2 
Broad Tumor PortalTCP11L2
OASIS PortalTCP11L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCP11L2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCP11L2
Mutations and Diseases : HGMDTCP11L2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCP11L2
DgiDB (Drug Gene Interaction Database)TCP11L2
DoCM (Curated mutations)TCP11L2
CIViC (Clinical Interpretations of Variants in Cancer)TCP11L2
Cancer3DTCP11L2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCP11L2
MedgenTCP11L2
Genetic Testing Registry TCP11L2
NextProtQ8N4U5 [Medical]
GENETestsTCP11L2
Target ValidationTCP11L2
Huge Navigator TCP11L2 [HugePedia]
ClinGenTCP11L2
Clinical trials, drugs, therapy
MyCancerGenomeTCP11L2
Protein Interactions : CTDTCP11L2
Pharm GKB GenePA142670825
PharosQ8N4U5
Clinical trialTCP11L2
Miscellaneous
canSAR (ICR)TCP11L2
HarmonizomeTCP11L2
DataMed IndexTCP11L2
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCP11L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:34:38 CEST 2021

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