Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TCP11L2 (t-complex 11 like 2)

Identity

Alias_namest-complex 11 (mouse) like 2
t-complex 11 (mouse)-like 2
t-complex 11, testis-specific-like 2
Alias_symbol (synonym)MGC40368
Other alias-
HGNC (Hugo) TCP11L2
LocusID (NCBI) 255394
Atlas_Id 53657
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 106302791 and ends at 106329868 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCP11L2   28627
Cards
Entrez_Gene (NCBI)TCP11L2  255394  t-complex 11 like 2
Aliases
GeneCards (Weizmann)TCP11L2
Ensembl hg19 (Hinxton)ENSG00000166046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166046 [Gene_View]  chr12:106302791-106329868 [Contig_View]  TCP11L2 [Vega]
ICGC DataPortalENSG00000166046
TCGA cBioPortalTCP11L2
AceView (NCBI)TCP11L2
Genatlas (Paris)TCP11L2
WikiGenes255394
SOURCE (Princeton)TCP11L2
Genetics Home Reference (NIH)TCP11L2
Genomic and cartography
GoldenPath hg38 (UCSC)TCP11L2  -     chr12:106302791-106329868 +  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCP11L2  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblTCP11L2 - 12q23.3 [CytoView hg19]  TCP11L2 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBITCP11L2 [Mapview hg19]  TCP11L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF306671 AF306672 AF306673 AF306674 AF306858
RefSeq transcript (Entrez)NM_001286262 NM_152772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCP11L2
Cluster EST : UnigeneHs.736922 [ NCBI ]
CGAP (NCI)Hs.736922
Alternative Splicing GalleryENSG00000166046
Gene ExpressionTCP11L2 [ NCBI-GEO ]   TCP11L2 [ EBI - ARRAY_EXPRESS ]   TCP11L2 [ SEEK ]   TCP11L2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCP11L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255394
GTEX Portal (Tissue expression)TCP11L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4U5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4U5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4U5
Splice isoforms : SwissVarQ8N4U5
PhosPhoSitePlusQ8N4U5
Domains : Interpro (EBI)Tcp11   
Domain families : Pfam (Sanger)Tcp11 (PF05794)   
Domain families : Pfam (NCBI)pfam05794   
Conserved Domain (NCBI)TCP11L2
DMDM Disease mutations255394
Blocks (Seattle)TCP11L2
SuperfamilyQ8N4U5
Human Protein AtlasENSG00000166046
Peptide AtlasQ8N4U5
HPRD17555
IPIIPI00749183   IPI01021486   IPI01021038   IPI01021851   IPI01021381   IPI01022131   IPI01021668   IPI01022193   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4U5
IntAct (EBI)Q8N4U5
FunCoupENSG00000166046
BioGRIDTCP11L2
STRING (EMBL)TCP11L2
ZODIACTCP11L2
Ontologies - Pathways
QuickGOQ8N4U5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTCP11L2
Atlas of Cancer Signalling NetworkTCP11L2
Wikipedia pathwaysTCP11L2
Orthology - Evolution
OrthoDB255394
GeneTree (enSembl)ENSG00000166046
Phylogenetic Trees/Animal Genes : TreeFamTCP11L2
HOVERGENQ8N4U5
HOGENOMQ8N4U5
Homologs : HomoloGeneTCP11L2
Homology/Alignments : Family Browser (UCSC)TCP11L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCP11L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCP11L2
dbVarTCP11L2
ClinVarTCP11L2
1000_GenomesTCP11L2 
Exome Variant ServerTCP11L2
ExAC (Exome Aggregation Consortium)TCP11L2 (select the gene name)
Genetic variants : HAPMAP255394
Genomic Variants (DGV)TCP11L2 [DGVbeta]
DECIPHERTCP11L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCP11L2 
Mutations
ICGC Data PortalTCP11L2 
TCGA Data PortalTCP11L2 
Broad Tumor PortalTCP11L2
OASIS PortalTCP11L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCP11L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCP11L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCP11L2
DgiDB (Drug Gene Interaction Database)TCP11L2
DoCM (Curated mutations)TCP11L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCP11L2 (select a term)
intoGenTCP11L2
Cancer3DTCP11L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCP11L2
Genetic Testing Registry TCP11L2
NextProtQ8N4U5 [Medical]
TSGene255394
GENETestsTCP11L2
Huge Navigator TCP11L2 [HugePedia]
snp3D : Map Gene to Disease255394
BioCentury BCIQTCP11L2
ClinGenTCP11L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255394
Chemical/Pharm GKB GenePA142670825
Clinical trialTCP11L2
Miscellaneous
canSAR (ICR)TCP11L2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCP11L2
EVEXTCP11L2
GoPubMedTCP11L2
iHOPTCP11L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:40:35 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.