Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCP11X2 (t-complex 11 family, X-linked 2)

Identity

Other alias-
HGNC (Hugo) TCP11X2
LocusID (NCBI) 100996648
Atlas_Id 74590
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102215301 and ends at 102226791 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCP11X2   48335
Cards
Entrez_Gene (NCBI)TCP11X2  100996648  t-complex 11 family, X-linked 2
Aliases
GeneCards (Weizmann)TCP11X2
Ensembl hg19 (Hinxton)ENSG00000215029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215029 [Gene_View]  chrX:102215301-102226791 [Contig_View]  TCP11X2 [Vega]
ICGC DataPortalENSG00000215029
TCGA cBioPortalTCP11X2
AceView (NCBI)TCP11X2
Genatlas (Paris)TCP11X2
WikiGenes100996648
SOURCE (Princeton)TCP11X2
Genetics Home Reference (NIH)TCP11X2
Genomic and cartography
GoldenPath hg38 (UCSC)TCP11X2  -     chrX:102215301-102226791 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCP11X2  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblTCP11X2 - Xq22.1 [CytoView hg19]  TCP11X2 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBITCP11X2 [Mapview hg19]  TCP11X2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093310 AK307893
RefSeq transcript (Entrez)NM_001277423
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCP11X2
Cluster EST : UnigeneHs.737538 [ NCBI ]
CGAP (NCI)Hs.737538
Alternative Splicing GalleryENSG00000215029
Gene ExpressionTCP11X2 [ NCBI-GEO ]   TCP11X2 [ EBI - ARRAY_EXPRESS ]   TCP11X2 [ SEEK ]   TCP11X2 [ MEM ]
Gene Expression Viewer (FireBrowse)TCP11X2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996648
GTEX Portal (Tissue expression)TCP11X2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9J9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9J9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9J9
Splice isoforms : SwissVarQ5H9J9
PhosPhoSitePlusQ5H9J9
Domains : Interpro (EBI)Tcp11   
Domain families : Pfam (Sanger)Tcp11 (PF05794)   
Domain families : Pfam (NCBI)pfam05794   
Conserved Domain (NCBI)TCP11X2
DMDM Disease mutations100996648
Blocks (Seattle)TCP11X2
SuperfamilyQ5H9J9
Human Protein AtlasENSG00000215029
Peptide AtlasQ5H9J9
Protein Interaction databases
DIP (DOE-UCLA)Q5H9J9
IntAct (EBI)Q5H9J9
FunCoupENSG00000215029
BioGRIDTCP11X2
STRING (EMBL)TCP11X2
ZODIACTCP11X2
Ontologies - Pathways
QuickGOQ5H9J9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTCP11X2
Atlas of Cancer Signalling NetworkTCP11X2
Wikipedia pathwaysTCP11X2
Orthology - Evolution
OrthoDB100996648
GeneTree (enSembl)ENSG00000215029
Phylogenetic Trees/Animal Genes : TreeFamTCP11X2
HOVERGENQ5H9J9
HOGENOMQ5H9J9
Homologs : HomoloGeneTCP11X2
Homology/Alignments : Family Browser (UCSC)TCP11X2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCP11X2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCP11X2
dbVarTCP11X2
ClinVarTCP11X2
1000_GenomesTCP11X2 
Exome Variant ServerTCP11X2
ExAC (Exome Aggregation Consortium)TCP11X2 (select the gene name)
Genetic variants : HAPMAP100996648
Genomic Variants (DGV)TCP11X2 [DGVbeta]
DECIPHERTCP11X2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCP11X2 
Mutations
ICGC Data PortalTCP11X2 
TCGA Data PortalTCP11X2 
Broad Tumor PortalTCP11X2
OASIS PortalTCP11X2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTCP11X2
BioMutasearch TCP11X2
DgiDB (Drug Gene Interaction Database)TCP11X2
DoCM (Curated mutations)TCP11X2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCP11X2 (select a term)
intoGenTCP11X2
Cancer3DTCP11X2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTCP11X2
Genetic Testing Registry TCP11X2
NextProtQ5H9J9 [Medical]
TSGene100996648
GENETestsTCP11X2
Target ValidationTCP11X2
Huge Navigator TCP11X2 [HugePedia]
snp3D : Map Gene to Disease100996648
BioCentury BCIQTCP11X2
ClinGenTCP11X2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996648
Chemical/Pharm GKB GenePA166123747
Clinical trialTCP11X2
Miscellaneous
canSAR (ICR)TCP11X2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCP11X2
EVEXTCP11X2
GoPubMedTCP11X2
iHOPTCP11X2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:08 CEST 2017

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