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TCTE1 (t-complex-associated-testis-expressed 1)

Identity

Alias_symbol (synonym)D6S46
MGC33600
FAP155
DRC5
Other alias
HGNC (Hugo) TCTE1
LocusID (NCBI) 202500
Atlas_Id 74591
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 44280160 and ends at 44297721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCTE1   11693
Cards
Entrez_Gene (NCBI)TCTE1  202500  t-complex-associated-testis-expressed 1
AliasesD6S46; DRC5; FAP155
GeneCards (Weizmann)TCTE1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:44280160-44297721 [Contig_View]  TCTE1 [Vega]
TCGA cBioPortalTCTE1
AceView (NCBI)TCTE1
Genatlas (Paris)TCTE1
WikiGenes202500
SOURCE (Princeton)TCTE1
Genetics Home Reference (NIH)TCTE1
Genomic and cartography
GoldenPath hg38 (UCSC)TCTE1  -     chr6:44280160-44297721 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCTE1  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblTCTE1 - 6p21.1 [CytoView hg19]  TCTE1 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBITCTE1 [Mapview hg19]  TCTE1 [Mapview hg38]
OMIM186975   
Gene and transcription
Genbank (Entrez)AA732744 AK301825 AK304265 BC035022 DQ891511
RefSeq transcript (Entrez)NM_182539
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCTE1
Cluster EST : UnigeneHs.189183 [ NCBI ]
CGAP (NCI)Hs.189183
Gene ExpressionTCTE1 [ NCBI-GEO ]   TCTE1 [ EBI - ARRAY_EXPRESS ]   TCTE1 [ SEEK ]   TCTE1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202500
GTEX Portal (Tissue expression)TCTE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JU00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JU00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JU00
Splice isoforms : SwissVarQ5JU00
PhosPhoSitePlusQ5JU00
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Conserved Domain (NCBI)TCTE1
DMDM Disease mutations202500
Blocks (Seattle)TCTE1
SuperfamilyQ5JU00
Peptide AtlasQ5JU00
HPRD14568
IPIIPI00293593   IPI00909471   IPI00552232   
Protein Interaction databases
DIP (DOE-UCLA)Q5JU00
IntAct (EBI)Q5JU00
BioGRIDTCTE1
STRING (EMBL)TCTE1
ZODIACTCTE1
Ontologies - Pathways
QuickGOQ5JU00
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTCTE1
Atlas of Cancer Signalling NetworkTCTE1
Wikipedia pathwaysTCTE1
Orthology - Evolution
OrthoDB202500
Phylogenetic Trees/Animal Genes : TreeFamTCTE1
HOVERGENQ5JU00
HOGENOMQ5JU00
Homologs : HomoloGeneTCTE1
Homology/Alignments : Family Browser (UCSC)TCTE1
Gene fusions - Rearrangements
Fusion : QuiverTCTE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTE1
dbVarTCTE1
ClinVarTCTE1
1000_GenomesTCTE1 
Exome Variant ServerTCTE1
Varsome BrowserTCTE1
Genetic variants : HAPMAP202500
Genomic Variants (DGV)TCTE1 [DGVbeta]
DECIPHERTCTE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCTE1 
Mutations
ICGC Data PortalTCTE1 
TCGA Data PortalTCTE1 
Broad Tumor PortalTCTE1
OASIS PortalTCTE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCTE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCTE1
DgiDB (Drug Gene Interaction Database)TCTE1
DoCM (Curated mutations)TCTE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCTE1 (select a term)
intoGenTCTE1
Cancer3DTCTE1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186975   
Orphanet
DisGeNETTCTE1
MedgenTCTE1
Genetic Testing Registry TCTE1
NextProtQ5JU00 [Medical]
TSGene202500
GENETestsTCTE1
Target ValidationTCTE1
Huge Navigator TCTE1 [HugePedia]
snp3D : Map Gene to Disease202500
BioCentury BCIQTCTE1
ClinGenTCTE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202500
Chemical/Pharm GKB GenePA36413
Clinical trialTCTE1
Miscellaneous
canSAR (ICR)TCTE1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCTE1
EVEXTCTE1
GoPubMedTCTE1
iHOPTCTE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:34:23 CEST 2018

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