Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCTE1 (t-complex-associated-testis-expressed 1)

Identity

Alias (NCBI)D6S46
DRC5
FAP155
HGNC (Hugo) TCTE1
HGNC Alias symbD6S46
MGC33600
FAP155
DRC5
LocusID (NCBI) 202500
Atlas_Id 74591
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 44278735 and ends at 44297698 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TCTE1   11693
Cards
Entrez_Gene (NCBI)TCTE1    t-complex-associated-testis-expressed 1
AliasesD6S46; DRC5; FAP155
GeneCards (Weizmann)TCTE1
Ensembl hg19 (Hinxton)ENSG00000146221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146221 [Gene_View]  ENSG00000146221 [Sequence]  chr6:44278735-44297698 [Contig_View]  TCTE1 [Vega]
ICGC DataPortalENSG00000146221
TCGA cBioPortalTCTE1
AceView (NCBI)TCTE1
Genatlas (Paris)TCTE1
SOURCE (Princeton)TCTE1
Genetics Home Reference (NIH)TCTE1
Genomic and cartography
GoldenPath hg38 (UCSC)TCTE1  -     chr6:44278735-44297698 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCTE1  -     6p21.1   [Description]    (hg19-Feb_2009)
GoldenPathTCTE1 - 6p21.1 [CytoView hg19]  TCTE1 - 6p21.1 [CytoView hg38]
ImmunoBaseENSG00000146221
Genome Data Viewer NCBITCTE1 [Mapview hg19]  
OMIM186975   
Gene and transcription
Genbank (Entrez)AA732744 AK301825 AK304265 BC035022
RefSeq transcript (Entrez)NM_182539
Consensus coding sequences : CCDS (NCBI)TCTE1
Gene ExpressionTCTE1 [ NCBI-GEO ]   TCTE1 [ EBI - ARRAY_EXPRESS ]   TCTE1 [ SEEK ]   TCTE1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTE1 [ Firebrowse - Broad ]
GenevisibleExpression of TCTE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202500
GTEX Portal (Tissue expression)TCTE1
Human Protein AtlasENSG00000146221-TCTE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JU00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JU00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JU00
PhosPhoSitePlusQ5JU00
Domains : Interpro (EBI)Leu-rich_rpt    LRR_dom_sf   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Conserved Domain (NCBI)TCTE1
SuperfamilyQ5JU00
AlphaFold pdb e-kbQ5JU00   
Human Protein Atlas [tissue]ENSG00000146221-TCTE1 [tissue]
HPRD14568
Protein Interaction databases
DIP (DOE-UCLA)Q5JU00
IntAct (EBI)Q5JU00
BioGRIDTCTE1
STRING (EMBL)TCTE1
ZODIACTCTE1
Ontologies - Pathways
QuickGOQ5JU00
Ontology : AmiGOcytoplasm  cytoskeleton  flagellated sperm motility  sperm flagellum  
Ontology : EGO-EBIcytoplasm  cytoskeleton  flagellated sperm motility  sperm flagellum  
NDEx NetworkTCTE1
Atlas of Cancer Signalling NetworkTCTE1
Wikipedia pathwaysTCTE1
Orthology - Evolution
OrthoDB202500
GeneTree (enSembl)ENSG00000146221
Phylogenetic Trees/Animal Genes : TreeFamTCTE1
Homologs : HomoloGeneTCTE1
Homology/Alignments : Family Browser (UCSC)TCTE1
Gene fusions - Rearrangements
Fusion : QuiverTCTE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTE1
dbVarTCTE1
ClinVarTCTE1
MonarchTCTE1
1000_GenomesTCTE1 
Exome Variant ServerTCTE1
GNOMAD BrowserENSG00000146221
Varsome BrowserTCTE1
ACMGTCTE1 variants
VarityQ5JU00
Genomic Variants (DGV)TCTE1 [DGVbeta]
DECIPHERTCTE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCTE1 
Mutations
ICGC Data PortalTCTE1 
TCGA Data PortalTCTE1 
Broad Tumor PortalTCTE1
OASIS PortalTCTE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTE1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTCTE1
Mutations and Diseases : HGMDTCTE1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTCTE1
DgiDB (Drug Gene Interaction Database)TCTE1
DoCM (Curated mutations)TCTE1
CIViC (Clinical Interpretations of Variants in Cancer)TCTE1
Cancer3DTCTE1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186975   
Orphanet
DisGeNETTCTE1
MedgenTCTE1
Genetic Testing Registry TCTE1
NextProtQ5JU00 [Medical]
GENETestsTCTE1
Target ValidationTCTE1
Huge Navigator TCTE1 [HugePedia]
ClinGenTCTE1
Clinical trials, drugs, therapy
MyCancerGenomeTCTE1
Protein Interactions : CTDTCTE1
Pharm GKB GenePA36413
PharosQ5JU00
Clinical trialTCTE1
Miscellaneous
canSAR (ICR)TCTE1
HarmonizomeTCTE1
DataMed IndexTCTE1
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTCTE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:06 CEST 2021

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