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TCTEX1D1 (Tctex1 domain containing 1)

Identity

Alias_symbol (synonym)FLJ40873
Other alias-
HGNC (Hugo) TCTEX1D1
LocusID (NCBI) 200132
Atlas_Id 74593
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 66752457 and ends at 66779047 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCTEX1D1   26882
Cards
Entrez_Gene (NCBI)TCTEX1D1  200132  Tctex1 domain containing 1
Aliases
GeneCards (Weizmann)TCTEX1D1
Ensembl hg19 (Hinxton)ENSG00000152760 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152760 [Gene_View]  chr1:66752457-66779047 [Contig_View]  TCTEX1D1 [Vega]
ICGC DataPortalENSG00000152760
TCGA cBioPortalTCTEX1D1
AceView (NCBI)TCTEX1D1
Genatlas (Paris)TCTEX1D1
WikiGenes200132
SOURCE (Princeton)TCTEX1D1
Genetics Home Reference (NIH)TCTEX1D1
Genomic and cartography
GoldenPath hg38 (UCSC)TCTEX1D1  -     chr1:66752457-66779047 +  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCTEX1D1  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblTCTEX1D1 - 1p31.3 [CytoView hg19]  TCTEX1D1 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBITCTEX1D1 [Mapview hg19]  TCTEX1D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI016360 AK098192 AK307100 AK307878 BC106885
RefSeq transcript (Entrez)NM_152665
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCTEX1D1
Cluster EST : UnigeneHs.479226 [ NCBI ]
CGAP (NCI)Hs.479226
Alternative Splicing GalleryENSG00000152760
Gene ExpressionTCTEX1D1 [ NCBI-GEO ]   TCTEX1D1 [ EBI - ARRAY_EXPRESS ]   TCTEX1D1 [ SEEK ]   TCTEX1D1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCTEX1D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200132
GTEX Portal (Tissue expression)TCTEX1D1
Human Protein AtlasENSG00000152760-TCTEX1D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7M0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7M0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7M0
Splice isoforms : SwissVarQ8N7M0
PhosPhoSitePlusQ8N7M0
Domains : Interpro (EBI)Tctex   
Domain families : Pfam (Sanger)Tctex-1 (PF03645)   
Domain families : Pfam (NCBI)pfam03645   
Conserved Domain (NCBI)TCTEX1D1
DMDM Disease mutations200132
Blocks (Seattle)TCTEX1D1
SuperfamilyQ8N7M0
Human Protein Atlas [tissue]ENSG00000152760-TCTEX1D1 [tissue]
Peptide AtlasQ8N7M0
HPRD08287
IPIIPI00167239   IPI00980001   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7M0
IntAct (EBI)Q8N7M0
FunCoupENSG00000152760
BioGRIDTCTEX1D1
STRING (EMBL)TCTEX1D1
ZODIACTCTEX1D1
Ontologies - Pathways
QuickGOQ8N7M0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTCTEX1D1
Atlas of Cancer Signalling NetworkTCTEX1D1
Wikipedia pathwaysTCTEX1D1
Orthology - Evolution
OrthoDB200132
GeneTree (enSembl)ENSG00000152760
Phylogenetic Trees/Animal Genes : TreeFamTCTEX1D1
HOVERGENQ8N7M0
HOGENOMQ8N7M0
Homologs : HomoloGeneTCTEX1D1
Homology/Alignments : Family Browser (UCSC)TCTEX1D1
Gene fusions - Rearrangements
Tumor Fusion PortalTCTEX1D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTCTEX1D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TCTEX1D1
dbVarTCTEX1D1
ClinVarTCTEX1D1
1000_GenomesTCTEX1D1 
Exome Variant ServerTCTEX1D1
ExAC (Exome Aggregation Consortium)ENSG00000152760
GNOMAD BrowserENSG00000152760
Genetic variants : HAPMAP200132
Genomic Variants (DGV)TCTEX1D1 [DGVbeta]
DECIPHERTCTEX1D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTCTEX1D1 
Mutations
ICGC Data PortalTCTEX1D1 
TCGA Data PortalTCTEX1D1 
Broad Tumor PortalTCTEX1D1
OASIS PortalTCTEX1D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTCTEX1D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTCTEX1D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TCTEX1D1
DgiDB (Drug Gene Interaction Database)TCTEX1D1
DoCM (Curated mutations)TCTEX1D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TCTEX1D1 (select a term)
intoGenTCTEX1D1
Cancer3DTCTEX1D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTCTEX1D1
MedgenTCTEX1D1
Genetic Testing Registry TCTEX1D1
NextProtQ8N7M0 [Medical]
TSGene200132
GENETestsTCTEX1D1
Target ValidationTCTEX1D1
Huge Navigator TCTEX1D1 [HugePedia]
snp3D : Map Gene to Disease200132
BioCentury BCIQTCTEX1D1
ClinGenTCTEX1D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200132
Chemical/Pharm GKB GenePA142670822
Clinical trialTCTEX1D1
Miscellaneous
canSAR (ICR)TCTEX1D1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCTEX1D1
EVEXTCTEX1D1
GoPubMedTCTEX1D1
iHOPTCTEX1D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:17:37 CET 2017

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